# Parameters
data_name = "Junb"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:15:06,386 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| memT;CD4+;A;CL |
Significance: 0.0429552 |
Significance: 0.036867000000000004 |
| Th17;CD4+;A;CL |
Significance: 0.0208988 |
Significance: 0.014685 |
| aB_LPS+IL21;A;CL |
Significance: 0.0410759 |
Significance: 0.05838009999999999 |
| BSPHL;A;CL |
Significance: 3.7367599999999997e-06 |
Significance: 0.024203799999999998 |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.0009274060000000001 |
Significance: 0.0219601 |
| NTRPHL;A;CL |
Significance: 0.0596692 |
Significance: 0.0400747 |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.020880900000000004 |
Significance: 0.04443540000000001 |
| DC_BMD;A;CL |
Significance: 0.0274342 |
Significance: 0.014192500000000002 |
| MCRPHG;A;CL |
Significance: 0.030732599999999995 |
Significance: 0.0557779 |
| Erythroblast;A;CL |
Significance: 0.00698033 |
Significance: 0.00881238 |
| ES;MEF;A;CL |
Significance: 0.0112105 |
Significance: 0.0531067 |
| SML_INTSTN;A;CL |
Significance: 0.030838099999999997 |
Significance: 0.00166185 |
| Heart;D;En |
Significance: 1.19006e-06 |
Significance: 0.0357409 |
| Adrenal;A;CL |
Significance: 0.019822 |
Significance: 0.0296572 |
| placenta;A;CL |
Significance: 0.02106 |
Significance: 0.0121446 |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.0138911 |
Significance: 0.0007738189999999999 |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.015411000000000001 |
Significance: 0.0141946 |
| BRN;PTMN;A;CL |
Significance: 0.014956299999999999 |
Significance: 0.0487148 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0233878 |
Significance: 0.012726399999999999 |
| restingB;A;CL |
Significance: 0.0563428 |
Significance: 0.0587057 |
| gamma_delta_TCR;A;CL |
Significance: 0.0333816 |
Significance: 0.012465100000000002 |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.0164165 |
Significance: 0.0276968 |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0322798 |
Significance: 0.00240397 |
| NK;IL2+IL12+;A;CL |
Significance: 3.0292200000000003e-06 |
Significance: 0.0385898 |
| NCR+ILC3;A;CL |
Significance: 0.0406505 |
Significance: 0.0134761 |
| ILC2_Nippo;A;CL |
Significance: 0.0165739 |
Significance: 0.0519895 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.018541400000000003 |
Significance: 5.0978e-05 |
| ILC2;A;CL |
Significance: 0.05445459999999999 |
Significance: 0.051024 |
| Th2_nippo;A;CL |
Significance: 0.0152153 |
Significance: 0.0241303 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.047808300000000005 |
Significance: 0.0202385 |
| wCH12_drug;A;CL |
Significance: 0.027666900000000005 |
Significance: 0.0211872 |
| ES;v6.5;A;GEO |
Significance: 0.056305499999999994 |
Significance: 0.00014812200000000002 |
| Mammary_GLND;A;GEO |
Significance: 0.040187400000000005 |
Significance: 0.0514594 |
| ILC2+IL33+IL25;A;GEO |
Significance: 1.45239e-06 |
Significance: 0.016862799999999997 |
| ILC1;A;GEO |
Significance: 0.0130702 |
Significance: 0.017834400000000004 |
| ILC2;A;GEO |
Significance: 0.029909300000000003 |
Significance: 0.0186669 |
| ILC3;A;GEO |
Significance: 0.046654 |
Significance: 0.026366399999999998 |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.037525300000000004 |
Significance: 0.05542419999999999 |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.052847000000000005 |
Significance: 0.0226625 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0153963 |
Significance: 0.013242700000000001 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.0332666 |
Significance: 0.0369454 |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.033561099999999996 |
Significance: 0.0226507 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.038218800000000004 |
Significance: 0.012210700000000001 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0427389 |
Significance: 0.0234011 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0160563 |
Significance: 0.015231 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.020052 |
Significance: 0.0268974 |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0300805 |
Significance: 0.0319065 |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0179875 |
Significance: 0.0275289 |
| aB;A;GEO |
Significance: 0.0496019 |
Significance: 0.0467083 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.053211699999999994 |
Significance: 0.015200799999999999 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.026371 |
Significance: 0.0217103 |
| Erythroid;Ter119+;A;GEO |
Significance: 0.00640835 |
Significance: 0.0478423 |
| AML;AE9a;A;GEO |
Significance: 0.00422285 |
Significance: 0.0463571 |
| DC_LPS;6h;A;GEO |
Significance: 0.0322433 |
Significance: 0.053539300000000005 |
| DC_LPS;2h;A;GEO |
Significance: 0.0236808 |
Significance: 0.026390800000000002 |
| DC_pBMD;A;GEO |
Significance: 0.045848599999999996 |
Significance: 0.020025 |
| SKN_EPTHL;A;GEO |
Significance: 0.0189713 |
Significance: 0.000326874 |
| BCK_SKN;A;GEO |
Significance: 0.0142571 |
Significance: 0.0123245 |
| ePyramidal_NRN;A;GEO |
Significance: 0.019191 |
Significance: 0.0487755 |
| iPV_NRN;A;GEO |
Significance: 0.0231388 |
Significance: 0.0274289 |
| eCortical_NRN;A;GEO |
Significance: 0.022625599999999996 |
Significance: 0.0528802 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.0240397 |
Significance: 0.021835900000000002 |
| Corticotrope;A;GEO |
Significance: 0.041866 |
Significance: 0.00369095 |
| Melanotrope;A;GEO |
Significance: 0.0129686 |
Significance: 0.000621605 |
| Mammary_BptfKO;A;GEO |
Significance: 0.0298289 |
Significance: 0.00019817900000000001 |
| EPP;A;En |
Significance: 0.00518255 |
Significance: 0.0437713 |
| pErythroblast;A;En |
Significance: 0.00747751 |
Significance: 0.0159316 |
| MegP;A;En |
Significance: 0.00361343 |
Significance: 0.0112515 |
| pCMP;A;CL |
Significance: 0.00378748 |
Significance: 0.00670634 |
| DC_LPS;4h;A;En |
Significance: 0.0441099 |
Significance: 0.0158386 |
| DC;A;En |
Significance: 0.0297399 |
Significance: 0.039588599999999995 |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.00438794 |
Significance: 0.048771100000000005 |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.030450900000000003 |
Significance: 0.0328004 |
| LNG;8wks;D;GEO |
Significance: 0.0342701 |
Significance: 0.0205954 |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.020412200000000002 |
Significance: 0.000513643 |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0189034 |
Significance: 0.00715321 |
| 416B_MP;CD34+;D;GEO |
Significance: 3.52904e-06 |
Significance: 0.0150483 |
| WHL_BRN;8wks;D;GEO |
Significance: 0.012757 |
Significance: 0.0223747 |
| NIH3T3_FBROBLST;D;En |
Significance: 0.0224896 |
Significance: 0.0526901 |
| FBRBLST;8wks;D;En |
Significance: 0.0192557 |
Significance: 0.0528534 |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.0175277 |
Significance: 0.024254599999999998 |
| wES;LVR;E11.5;D.;En |
Significance: 0.00695863 |
Significance: 0.0086767 |
| LNG;8wks;D;En |
Significance: 0.024326300000000002 |
Significance: 0.000634001 |
| LNG;P0;D;En |
Significance: 0.0458563 |
Significance: 0.00129424 |
| Heart;P0;D;En |
Significance: 0.0498357 |
Significance: 0.00027104099999999997 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.0319213 |
Significance: 0.0011594 |
| Adipose;D;En |
Significance: 0.0102758 |
Significance: 0.000644972 |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.00847554 |
Significance: 0.00497193 |
| 416B_MP;CD34+;D;En |
Significance: 0.000219707 |
Significance: 0.0363275 |
| Muller;P12;D;En |
Significance: 0.0188918 |
Significance: 0.0272615 |
| WHL_BRN;8wks;D;En |
Significance: 0.022136199999999998 |
Significance: 0.0442791 |
| wES;Telenchephalon;D;En |
Significance: 0.0106418 |
Significance: 0.0317367 |
| LRG_INTSTN;8wks;D;En |
Significance: 0.0195323 |
Significance: 0.00147368 |
| STMCH;P0;D;En |
Significance: 0.0276323 |
Significance: 0.0279522 |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.053209400000000004 |
Significance: 0.054361599999999996 |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.026014 |
Significance: 0.0157345 |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 5.77823e-05 |
Significance: 0.000281793 |
| AML;D;En |
Significance: 0.0006803860000000001 |
Significance: 0.059472199999999996 |
| CH12.LX;D;En |
Significance: 0.046854 |
Significance: 0.00747775 |
| MEF.GATA-1-ER;D;En |
Significance: 0.005864899999999999 |
Significance: 0.0477769 |
| MEL;D;En |
Significance: 0.00248318 |
Significance: 0.0148144 |
| NIH3T3;D;En |
Significance: 0.0364535 |
Significance: 0.029676400000000002 |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.022357 |
Significance: 0.000297932 |
| MN1;D;En |
Significance: 0.0335596 |
Significance: 0.000507441 |
| 3T3-L1;D;En |
Significance: 0.019788099999999996 |
Significance: 0.031211000000000003 |
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.00438568 | Absent |
| naiveCD8;A;CL |
Significance: 0.027901799999999997 | Absent |
| NK_SPLND;A;CL |
Significance: 0.0235305 | Absent |
| proB;A;CL |
Significance: 0.0007760110000000001 | Absent |
| matureB;A;CL |
Significance: 0.038567500000000005 | Absent |
| B1_B;A;CL |
Significance: 0.038427499999999996 | Absent |
| plasmaB;A;CL |
Significance: 0.0529766 | Absent |
| aB_LPS;A;CL |
Significance: 0.0462094 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.014079099999999999 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.047256900000000004 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.000343418 | Absent |
| Mast;A;CL |
Significance: 0.0415596 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.00023005400000000002 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.018090000000000002 | Absent |
| Tfh;A;CL |
Significance: 0.00998859 | Absent |
| Tfh_mut;A;CL |
Significance: 0.0198278 | Absent |
| aNonTfh;A;CL |
Significance: 0.024166999999999998 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.019199400000000002 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.014140200000000002 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00166288 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.022161700000000003 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0321959 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0560967 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0451348 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0333288 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.023182599999999998 | Absent |
| DP;A;CL |
Significance: 0.00499087 | Absent |
| DP3a;A;CL |
Significance: 0.00315115 | Absent |
| ES;E14;A;CL |
Significance: 0.0230204 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.0409951 | Absent |
| LNG;A;CL |
Significance: 1.10667e-05 | Absent |
| Muscle;A;CL |
Significance: 0.00168632 | Absent |
| Adipose;A;CL |
Significance: 0.0357542 | Absent |
| Mammary;A;CL |
Significance: 0.0122723 | Absent |
| STMCH;A;CL |
Significance: 0.000115979 | Absent |
| PNCRS;A;CL |
Significance: 0.048840800000000004 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.038114 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.038582099999999994 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.036095999999999996 | Absent |
| aB;CD180;A;CL |
Significance: 0.035517 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.018774799999999998 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.00558201 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.000348073 | Absent |
| ILC1;A;CL |
Significance: 0.0401145 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.023171599999999997 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.016957299999999998 | Absent |
| wCH12;A;CL |
Significance: 0.017958500000000002 | Absent |
| CH12;med14;A;CL |
Significance: 0.0130168 | Absent |
| CLP;A;CL |
Significance: 0.000180302 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0244915 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0452278 | Absent |
| NTRPHL;A;GEO |
Significance: 0.0394108 | Absent |
| ES;J1;A;CL |
Significance: 0.00105337 | Absent |
| ES;E14;A;GEO |
Significance: 0.018877099999999997 | Absent |
| ES;F1216;A;GEO |
Significance: 2.49467e-05 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.000138555 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0201718 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0275862 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.023044799999999997 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.0463806 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0298916 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.0336767 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0184578 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0418599 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.034186699999999993 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0278798 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0248484 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0145904 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0315849 | Absent |
| iNKT;A;GEO |
Significance: 0.0550369 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0264584 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.000697641 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 0.0308722 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.0259564 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.055967499999999996 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.020620199999999998 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.031965 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0418218 | Absent |
| NPC;F129;A;GEO |
Significance: 0.031627499999999996 | Absent |
| NPC;G4;A;GEO |
Significance: 0.0500509 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.0206874 | Absent |
| NPC;mE6;A;GEO |
Significance: 1.45787e-06 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.0124932 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.00291618 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.000315985 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.000856445 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 0.000826232 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.0004984459999999999 | Absent |
| pMeg;A;En |
Significance: 0.00237216 | Absent |
| MegEP;A;CL |
Significance: 0.00432155 | Absent |
| pGMP;A;En |
Significance: 0.0020012999999999997 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.00506684 | Absent |
| ES;D0;D;GEO |
Significance: 0.00424501 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.05635740000000001 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.029945999999999997 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.0113558 | Absent |
| apTreg;D;GEO |
Significance: 0.017496400000000002 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.00438072 | Absent |
| ES;E14;D;En |
Significance: 0.00482748 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.00296721 | Absent |
| KDNY;P0;D;En |
Significance: 0.0170396 | Absent |
| KDNY;8wks;D;En |
Significance: 0.0494274 | Absent |
| LVR;8wks;D;En |
Significance: 0.00713199 | Absent |
| LVR;P0;D;En |
Significance: 0.00032691700000000003 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.0398952 | Absent |
| Heart;8wks;D;En |
Significance: 0.013299700000000001 | Absent |
| RTN;D1;D;En |
Significance: 0.0236408 | Absent |
| CRBLM;D;En |
Significance: 0.0230879 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.015908500000000003 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.0113443 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 0.0320935 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.0436925 | Absent |
| Spleen;8wks;D;En |
Significance: 0.0420144 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.00154439 | Absent |