# Parameters
data_name = "Bach1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 10:58:14,557 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| memT;CD4+;A;CL |
Significance: 0.0397441 |
Significance: 0.0221777 |
| BSPHL;A;CL |
Significance: 0.000279003 |
Significance: 0.016458700000000003 |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 1.98469e-05 |
Significance: 0.00825169 |
| NTRPHL;A;CL |
Significance: 0.000125785 |
Significance: 0.0143095 |
| DC_BMD;A;CL |
Significance: 0.00213074 |
Significance: 0.000650997 |
| MCRPHG;A;CL |
Significance: 0.0117015 |
Significance: 0.00966214 |
| Erythroblast;A;CL |
Significance: 2.8131000000000002e-06 |
Significance: 9.42994e-05 |
| ES;MEF;A;CL |
Significance: 0.0106544 |
Significance: 0.017508700000000002 |
| SML_INTSTN;A;CL |
Significance: 0.00846333 |
Significance: 0.0583502 |
| Heart;D;En |
Significance: 0.00266816 |
Significance: 0.0109818 |
| placenta;A;CL |
Significance: 0.00775674 |
Significance: 0.00024599400000000003 |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.015599000000000002 |
Significance: 0.0108082 |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.00717351 |
Significance: 0.00046886800000000005 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.00886297 |
Significance: 0.00199979 |
| gamma_delta_TCR;A;CL |
Significance: 0.00242732 |
Significance: 0.014112999999999999 |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.015037299999999998 |
Significance: 0.00455178 |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.000483955 |
Significance: 0.032035400000000006 |
| NCR+ILC3;A;CL |
Significance: 0.00381547 |
Significance: 0.017809000000000002 |
| ILC2_Nippo;A;CL |
Significance: 0.0147351 |
Significance: 0.00516812 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00163338 |
Significance: 0.00907994 |
| ILC2;A;CL |
Significance: 0.00042948199999999996 |
Significance: 0.03675080000000001 |
| Th2_nippo;A;CL |
Significance: 0.000216127 |
Significance: 0.0384345 |
| ES;v6.5;A;GEO |
Significance: 0.00154392 |
Significance: 0.00821721 |
| Mammary_GLND;A;GEO |
Significance: 0.00346922 |
Significance: 0.00115938 |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.00137654 |
Significance: 0.00973295 |
| ILC1;A;GEO |
Significance: 0.012147499999999999 |
Significance: 0.00861027 |
| ILC3;A;GEO |
Significance: 0.00644772 |
Significance: 0.0116612 |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.0006451919999999999 |
Significance: 0.0333059 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.0190576 |
Significance: 0.00238715 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00943232 |
Significance: 0.0007784239999999999 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00848366 |
Significance: 0.00777962 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00953979 |
Significance: 0.000497332 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00846273 |
Significance: 0.0101691 |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0117411 |
Significance: 0.011399600000000001 |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0145115 |
Significance: 0.00967522 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.00109133 |
Significance: 0.00115775 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.00352631 |
Significance: 0.00276704 |
| Erythroid;Ter119+;A;GEO |
Significance: 2.82257e-06 |
Significance: 8.03671e-07 |
| AML;AE9a;A;GEO |
Significance: 1.14195e-05 |
Significance: 1.1909200000000001e-05 |
| DC_LPS;6h;A;GEO |
Significance: 0.00421756 |
Significance: 0.00746753 |
| DC_LPS;2h;A;GEO |
Significance: 0.00364866 |
Significance: 0.018986700000000002 |
| DC_pBMD;A;GEO |
Significance: 0.000988392 |
Significance: 0.00153511 |
| SKN_EPTHL;A;GEO |
Significance: 0.018409599999999998 |
Significance: 0.0193165 |
| BCK_SKN;A;GEO |
Significance: 0.00845075 |
Significance: 0.017108500000000002 |
| ePyramidal_NRN;A;GEO |
Significance: 0.0100625 |
Significance: 0.037408699999999996 |
| iPV_NRN;A;GEO |
Significance: 0.00640872 |
Significance: 0.0210065 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.052672300000000005 |
Significance: 0.00687534 |
| Corticotrope;A;GEO |
Significance: 0.00171776 |
Significance: 0.0486546 |
| Melanotrope;A;GEO |
Significance: 0.00657275 |
Significance: 0.046616000000000005 |
| Mammary_BptfKO;A;GEO |
Significance: 0.00713061 |
Significance: 0.00772019 |
| EPP;A;En |
Significance: 1.44865e-06 |
Significance: 0.000728515 |
| pErythroblast;A;En |
Significance: 3.3658099999999995e-06 |
Significance: 6.47105e-08 |
| MegP;A;En |
Significance: 2.04876e-06 |
Significance: 0.00032566400000000003 |
| pCMP;A;CL |
Significance: 2.77546e-06 |
Significance: 9.305849999999999e-07 |
| DC_LPS;4h;A;En |
Significance: 0.000480034 |
Significance: 0.000953631 |
| DC;A;En |
Significance: 0.000928245 |
Significance: 0.00225447 |
| ES;ZhBTc4;1;D;GEO |
Significance: 6.1711900000000005e-06 |
Significance: 8.72536e-06 |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.00209068 |
Significance: 0.00911012 |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.043574800000000004 |
Significance: 0.0138155 |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.0046515 |
Significance: 0.00031272200000000003 |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00038777099999999997 |
Significance: 0.00089389 |
| WHL_BRN;8wks;D;GEO |
Significance: 0.00953355 |
Significance: 0.020992900000000002 |
| NIH3T3_FBROBLST;D;En |
Significance: 0.03324559999999999 |
Significance: 0.00374972 |
| FBRBLST;8wks;D;En |
Significance: 0.010054 |
Significance: 0.000922219 |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.00450019 |
Significance: 0.0161648 |
| wES;LVR;E11.5;D.;En |
Significance: 1.5480299999999998e-05 |
Significance: 0.000143559 |
| LNG;8wks;D;En |
Significance: 0.00163417 |
Significance: 0.0449001 |
| LNG;P0;D;En |
Significance: 0.008813600000000001 |
Significance: 0.028767200000000003 |
| Heart;P0;D;En |
Significance: 0.0064223 |
Significance: 0.020999200000000003 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 8.79094e-05 |
Significance: 0.00470004 |
| Adipose;D;En |
Significance: 0.000332372 |
Significance: 0.017610900000000002 |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 2.5445e-05 |
Significance: 1.10298e-05 |
| 416B_MP;CD34+;D;En |
Significance: 2.91146e-05 |
Significance: 0.00813991 |
| Muller;P12;D;En |
Significance: 0.00895016 |
Significance: 0.0462224 |
| WHL_BRN;8wks;D;En |
Significance: 0.0105315 |
Significance: 0.00903696 |
| wES;Telenchephalon;D;En |
Significance: 0.0106418 |
Significance: 0.023068599999999998 |
| STMCH;P0;D;En |
Significance: 0.00633601 |
Significance: 0.012377299999999999 |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.0536581 |
Significance: 0.00113377 |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 9.899389999999999e-05 |
Significance: 0.00734783 |
| AML;D;En |
Significance: 0.00175288 |
Significance: 0.00363963 |
| CH12.LX;D;En |
Significance: 0.023704 |
Significance: 0.0592731 |
| MEF.GATA-1-ER;D;En |
Significance: 9.84322e-06 |
Significance: 2.5164200000000002e-05 |
| MEL;D;En |
Significance: 4.84951e-06 |
Significance: 0.000175852 |
| NIH3T3;D;En |
Significance: 0.047249599999999996 |
Significance: 0.013221100000000001 |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0122625 |
Significance: 0.00638182 |
| MN1;D;En |
Significance: 0.0277598 |
Significance: 0.00284012 |
| 3T3-L1;D;En |
Significance: 0.035549800000000006 |
Significance: 0.012152600000000001 |
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 3.8351800000000004e-06 | Absent |
| naiveCD8;A;CL |
Significance: 0.00441443 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0005419309999999999 | Absent |
| NK_SPLND;A;CL |
Significance: 0.00975164 | Absent |
| proB;A;CL |
Significance: 2.69805e-05 | Absent |
| matureB;A;CL |
Significance: 0.00864847 | Absent |
| B1_B;A;CL |
Significance: 0.00883295 | Absent |
| plasmaB;A;CL |
Significance: 5.05593e-05 | Absent |
| aB_LPS;A;CL |
Significance: 0.00025983 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.00824996 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.00666467 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.00247813 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.056443499999999994 | Absent |
| Mast;A;CL |
Significance: 6.147230000000001e-06 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 7.28513e-05 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.00157929 | Absent |
| Tfh;A;CL |
Significance: 0.00957012 | Absent |
| aNonTfh;A;CL |
Significance: 0.00524975 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.0021208000000000004 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00185433 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.013659399999999999 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00924956 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00491687 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0134928 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.010556600000000001 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00464493 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0106301 | Absent |
| DP;A;CL |
Significance: 0.00358105 | Absent |
| DP3a;A;CL |
Significance: 3.44394e-05 | Absent |
| ES;E14;A;CL |
Significance: 0.00397914 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.00524651 | Absent |
| LNG;A;CL |
Significance: 0.00529643 | Absent |
| Muscle;A;CL |
Significance: 0.00655687 | Absent |
| Adipose;A;CL |
Significance: 0.00354214 | Absent |
| Mammary;A;CL |
Significance: 0.010691899999999999 | Absent |
| Adrenal;A;CL |
Significance: 0.0105791 | Absent |
| STMCH;A;CL |
Significance: 0.0147643 | Absent |
| PNCRS;A;CL |
Significance: 0.00519443 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0077583 | Absent |
| BRN;PTMN;A;CL |
Significance: 0.0107691 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.0206734 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.00475206 | Absent |
| aB;CD180;A;CL |
Significance: 0.00865345 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 1.72068e-05 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 1.60174e-05 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.00152971 | Absent |
| ILC1;A;CL |
Significance: 0.00511053 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.00190739 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.00026079900000000004 | Absent |
| wCH12;A;CL |
Significance: 0.0033575000000000002 | Absent |
| CH12;med14;A;CL |
Significance: 0.00724497 | Absent |
| CLP;A;CL |
Significance: 3.67476e-05 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.00546329 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.00443262 | Absent |
| NTRPHL;A;GEO |
Significance: 7.194349999999999e-06 | Absent |
| ES;J1;A;CL |
Significance: 3.44612e-05 | Absent |
| ES;E14;A;GEO |
Significance: 0.00444531 | Absent |
| ES;F1216;A;GEO |
Significance: 0.00338771 | Absent |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 6.15049e-05 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0113179 | Absent |
| ILC2;A;GEO |
Significance: 0.000299238 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.00895244 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.00519379 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.00362639 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.00545393 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.000269364 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.00381281 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.00926961 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00470153 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.010557299999999999 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.011896700000000001 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.01518 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.017181000000000002 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0145904 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0492794 | Absent |
| iNKT;A;GEO |
Significance: 0.019071400000000002 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.00496525 | Absent |
| ENDRM_ESD;A;GEO |
Significance: 0.00190816 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.00927002 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.00545964 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0156338 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0389475 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.00712449 | Absent |
| NPC;F129;A;GEO |
Significance: 0.00399794 | Absent |
| NPC;G4;A;GEO |
Significance: 0.000438717 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.00442615 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.00177116 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.0197254 | Absent |
| eCortical_NRN;A;GEO |
Significance: 0.013155100000000001 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 1.9972099999999996e-06 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 2.2185e-05 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 7.15308e-06 | Absent |
| ES;JM8.N4;Asynch;A;GEO |
Significance: 7.80051e-05 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.00282412 | Absent |
| pMeg;A;En |
Significance: 7.32832e-06 | Absent |
| MegEP;A;CL |
Significance: 3.35647e-06 | Absent |
| pGMP;A;En |
Significance: 3.3847000000000004e-06 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 8.61827e-06 | Absent |
| ES;D0;D;GEO |
Significance: 2.79125e-05 | Absent |
| LVR;8wks;D;GEO |
Significance: 8.488710000000001e-06 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.000784559 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0232845 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.00811629 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 1.25989e-05 | Absent |
| ES;E14;D;En |
Significance: 1.70351e-05 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 1.4862399999999999e-06 | Absent |
| KDNY;P0;D;En |
Significance: 0.0106472 | Absent |
| KDNY;8wks;D;En |
Significance: 1.55197e-05 | Absent |
| LVR;8wks;D;En |
Significance: 0.000251025 | Absent |
| LVR;P0;D;En |
Significance: 0.00288971 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.00048528 | Absent |
| Heart;8wks;D;En |
Significance: 0.000292373 | Absent |
| CRBLM;D;En |
Significance: 0.0211918 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.00969553 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.00758126 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.00775893 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 0.00674583 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.000223042 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 2.27833e-06 | Absent |
| Cell type | Modisco | Homer |
|---|---|---|
| aB_LPS+IL4+Oligomycin_24h;A;CL | Absent |
Significance: 0.00606926 |
| wCH12_drug;A;CL | Absent |
Significance: 0.011487899999999999 |