# Parameters
data_name = "Spic"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:37:31,590 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.00402813 |
Significance: 0.000174311 |
| memT;CD4+;A;CL |
Significance: 0.0204548 |
Significance: 0.042099300000000006 |
| NK_SPLND;A;CL |
Significance: 0.0454142 |
Significance: 0.0277793 |
| proB;A;CL |
Significance: 0.00241231 |
Significance: 0.000447262 |
| preB;A;CL |
Significance: 0.00023601200000000002 |
Significance: 0.00040617800000000004 |
| immatureB;A;CL |
Significance: 0.000871189 |
Significance: 0.0005298319999999999 |
| matureB;A;CL |
Significance: 0.0004939909999999999 |
Significance: 0.00043013 |
| MZ_B;A;CL |
Significance: 0.00675686 |
Significance: 0.000653804 |
| B1_B;A;CL |
Significance: 0.000160899 |
Significance: 0.000680742 |
| GC_B;A;CL |
Significance: 0.00362655 |
Significance: 0.000158426 |
| plasmaB;A;CL |
Significance: 0.00311337 |
Significance: 0.00275384 |
| aB_LPS;A;CL |
Significance: 0.000303585 |
Significance: 0.00348613 |
| aB_LPS+IL4;A;CL |
Significance: 0.000341603 |
Significance: 0.00196013 |
| aB_LPS+IL21;A;CL |
Significance: 0.00291224 |
Significance: 0.00484172 |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.0008029339999999999 |
Significance: 0.00868351 |
| aB_CD40+IL4;A;CL |
Significance: 0.00037304300000000004 |
Significance: 0.00322562 |
| Mast;A;CL |
Significance: 0.00020052 |
Significance: 0.0063826 |
| BSPHL;A;CL |
Significance: 0.00136944 |
Significance: 0.00182051 |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.00018344900000000003 |
Significance: 0.00639529 |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.000176043 |
Significance: 0.0014299000000000002 |
| NTRPHL;A;CL |
Significance: 0.000398862 |
Significance: 0.000575074 |
| Tfh;A;CL |
Significance: 0.030363400000000002 |
Significance: 0.0164261 |
| Tfh_mut;A;CL |
Significance: 0.00898624 |
Significance: 0.0431 |
| aNonTfh;A;CL |
Significance: 0.05539259999999999 |
Significance: 0.0430406 |
| aNonTfh_mut;A;CL |
Significance: 0.021236900000000003 |
Significance: 0.0187465 |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.037157800000000005 |
Significance: 0.044947100000000004 |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.023431599999999997 |
Significance: 0.047956099999999995 |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0366431 |
Significance: 0.04372519999999999 |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.0214343 |
Significance: 0.019873599999999998 |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.030764599999999996 |
Significance: 0.013040799999999998 |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.0497556 |
Significance: 0.0084664 |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.05955560000000001 |
Significance: 0.0181753 |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.0359733 |
Significance: 0.00688673 |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.024631999999999998 |
Significance: 0.033409100000000004 |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0526872 |
Significance: 0.0456733 |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.040044300000000005 |
Significance: 0.0540182 |
| DC_BMD;A;CL |
Significance: 0.00383014 |
Significance: 6.1114e-05 |
| MCRPHG;A;CL |
Significance: 0.00486297 |
Significance: 0.00031793 |
| DP;A;CL |
Significance: 0.0432097 |
Significance: 0.0520721 |
| DP3b;A;CL |
Significance: 0.0474764 |
Significance: 0.0435964 |
| SML_INTSTN;A;CL |
Significance: 0.00997909 |
Significance: 0.0471849 |
| LRG_INTSTN;A;CL |
Significance: 0.0105125 |
Significance: 0.0189165 |
| LNG;A;CL |
Significance: 0.00187025 |
Significance: 0.0253357 |
| Adipose;A;CL |
Significance: 0.04106459999999999 |
Significance: 0.019056 |
| PNCRS;A;CL |
Significance: 0.05096919999999999 |
Significance: 0.0123714 |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0164824 |
Significance: 0.05158390000000001 |
| restingB;A;CL |
Significance: 0.0006106169999999999 |
Significance: 0.00952661 |
| aB;CD180;A;CL |
Significance: 0.00033658099999999997 |
Significance: 0.0139345 |
| LNG_TRM_HSC;A;CL |
Significance: 0.000676418 |
Significance: 0.00406576 |
| SHRT_TRM_HSC;A;CL |
Significance: 0.00320441 |
Significance: 0.00030523299999999997 |
| gamma_delta_TCR;A;CL |
Significance: 0.000985108 |
Significance: 0.026058799999999997 |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.00177552 |
Significance: 0.000457063 |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.0249481 |
Significance: 0.00448674 |
| ILC2_Nippo;A;CL |
Significance: 0.0214631 |
Significance: 0.057082799999999996 |
| ILC1;A;CL |
Significance: 0.0360606 |
Significance: 0.054100999999999996 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.0491474 |
Significance: 0.0259372 |
| ILC2;A;CL |
Significance: 0.0200613 |
Significance: 0.0161102 |
| Th2_nippo;A;CL |
Significance: 0.057677 |
Significance: 0.0205069 |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.00033374800000000003 |
Significance: 0.00767735 |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.00257515 |
Significance: 0.00478273 |
| CH12_QNTPLE;A;CL |
Significance: 0.00037475 |
Significance: 0.00122632 |
| wCH12;A;CL |
Significance: 0.00371912 |
Significance: 0.00108287 |
| CH12;med14;A;CL |
Significance: 0.00028184 |
Significance: 0.00565604 |
| wCH12_drug;A;CL |
Significance: 0.00352511 |
Significance: 0.000700717 |
| CLP;A;CL |
Significance: 0.00363121 |
Significance: 0.00309803 |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0363721 |
Significance: 0.058524099999999996 |
| NTRPHL;A;GEO |
Significance: 0.000364868 |
Significance: 0.00311006 |
| ES;E14;A;GEO |
Significance: 0.031362799999999996 |
Significance: 0.0400452 |
| ILC3;A;GEO |
Significance: 0.0189087 |
Significance: 0.04493130000000001 |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.055568200000000005 |
Significance: 0.0109789 |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.0503495 |
Significance: 0.024721 |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0334988 |
Significance: 0.042533 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.045761800000000005 |
Significance: 0.026333699999999998 |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0416176 |
Significance: 0.0470395 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0554116 |
Significance: 0.0573484 |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.059300900000000004 |
Significance: 0.0451785 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.040787300000000005 |
Significance: 0.00415778 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.054527099999999995 |
Significance: 0.0358894 |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0463524 |
Significance: 0.036193300000000005 |
| aB;A;GEO |
Significance: 0.000886528 |
Significance: 0.000107967 |
| prePLSM_B;A;GEO |
Significance: 0.00023455 |
Significance: 0.000203932 |
| B_SPLND;A;GEO |
Significance: 0.00016728 |
Significance: 0.000635206 |
| preB_BMD;A;GEO |
Significance: 0.00390882 |
Significance: 0.000167207 |
| B;B220_CD43;A;GEO |
Significance: 0.0418585 |
Significance: 0.00327318 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.00149121 |
Significance: 6.92114e-05 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.00441241 |
Significance: 3.9842e-06 |
| Erythroid;Ter119+;A;GEO |
Significance: 0.05877380000000001 |
Significance: 0.044649 |
| AML;AE9a;A;GEO |
Significance: 0.00114058 |
Significance: 0.00139383 |
| DC_LPS;6h;A;GEO |
Significance: 0.00303039 |
Significance: 0.00130102 |
| DC_LPS;2h;A;GEO |
Significance: 0.00338468 |
Significance: 0.00018033 |
| DC_pBMD;A;GEO |
Significance: 0.00328356 |
Significance: 0.000119747 |
| SKN_EPTHL;A;GEO |
Significance: 0.054979099999999996 |
Significance: 0.023003700000000002 |
| pMeg;A;En |
Significance: 0.00353197 |
Significance: 0.00020524400000000002 |
| MegEP;A;CL |
Significance: 0.0073817 |
Significance: 0.043574699999999994 |
| MegP;A;En |
Significance: 0.00265201 |
Significance: 0.00106704 |
| pCMP;A;CL |
Significance: 0.00231848 |
Significance: 1.82837e-05 |
| DC_LPS;4h;A;En |
Significance: 0.00282653 |
Significance: 0.000414091 |
| pGMP;A;En |
Significance: 0.0025712 |
Significance: 0.000200175 |
| DC;A;En |
Significance: 0.00393067 |
Significance: 0.000264938 |
| LNG;8wks;D;GEO |
Significance: 0.056785300000000004 |
Significance: 0.0109541 |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0338536 |
Significance: 0.011203 |
| Treg;CD4+_CD25+;D;GEO |
Significance: 0.0500411 |
Significance: 0.0114713 |
| apCD4Eff;D;GEO |
Significance: 0.0408491 |
Significance: 0.0295697 |
| immatureB_SPLND;CD43-_CD11b-;D;GEO |
Significance: 0.00442074 |
Significance: 0.00297662 |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00429014 |
Significance: 0.010060600000000001 |
| KDNY;8wks;D;En |
Significance: 0.020432699999999998 |
Significance: 0.0324715 |
| LNG;8wks;D;En |
Significance: 0.00117661 |
Significance: 0.0242747 |
| LNG;P0;D;En |
Significance: 0.014711400000000001 |
Significance: 0.0239335 |
| wES;LNG;E14.5;D;En |
Significance: 0.028304900000000004 |
Significance: 0.0449948 |
| wES;RTN;E11.5;D;En |
Significance: 0.0498255 |
Significance: 0.0164374 |
| apThEff;CD4+;8wks;D;En. |
Significance: 0.010715299999999999 |
Significance: 0.0453582 |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.03906130000000001 |
Significance: 0.047328300000000004 |
| apTreg;8wk;D;En |
Significance: 0.044206999999999996 |
Significance: 0.030470599999999997 |
| 416B_MP;CD34+;D;En |
Significance: 0.00530513 |
Significance: 0.0532597 |
| immatureB_SPLND;CD43-_CD11b-;D;En |
Significance: 0.00604664 |
Significance: 0.000244864 |
| LRG_INTSTN;8wks;D;En |
Significance: 0.029149599999999998 |
Significance: 0.028359199999999998 |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.00298982 |
Significance: 0.0475962 |
| Spleen;8wks;D;En |
Significance: 0.00144025 |
Significance: 0.00295388 |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.0386663 |
Significance: 0.0364589 |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00411541 |
Significance: 0.0341164 |
| A20;B-lymphoma;D;En |
Significance: 0.042451800000000005 |
Significance: 0.000264211 |
| AML;D;En |
Significance: 0.00417033 |
Significance: 1.92732e-06 |
| CH12.LX;D;En |
Significance: 0.00335163 |
Significance: 0.000827653 |
| MEF.GATA-1-ER;D;En |
Significance: 0.00465825 |
Significance: 3.50427e-05 |
| MEL;D;En |
Significance: 0.00490608 |
Significance: 3.40034e-05 |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.00207213 |
Significance: 0.00122423 |
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.043753 | Absent |
| naiveCD8;A;CL |
Significance: 0.0485537 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0438419 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0455689 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0299572 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.0443469 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.0342768 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 0.034844400000000005 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.0285779 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.00673987 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 0.0265281 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0556472 | Absent |
| STMCH;P0;D;En |
Significance: 0.0476228 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.045601800000000005 | Absent |
| 3T3-L1;D;En |
Significance: 0.046270599999999995 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.027835000000000002 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0304387 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.05720359999999999 | Absent |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.028344599999999998 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0447921 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.034477 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0511935 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.030781 | Absent |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0404539 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0276017 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0281202 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0510708 | Absent |
| NPC;F129;A;GEO |
Significance: 0.04871369999999999 | Absent |
| NPC;Ch13;A;GEO |
Significance: 0.037577 | Absent |
| DP3a;A;CL |
Significance: 0.0425841 | Absent |
| ISP;A;CL |
Significance: 0.0564188 | Absent |
| ES;E14;A;CL |
Significance: 0.0317642 | Absent |
| ES;MEF;A;CL |
Significance: 0.0333922 | Absent |
| G_NRN_P;A;GEO |
Significance: 0.042955 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.00237425 | Absent |
| Muscle;A;CL |
Significance: 0.0496335 | Absent |
| Heart;D;En |
Significance: 0.0572341 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.042029000000000004 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.0235274 | Absent |
| Adrenal;A;CL |
Significance: 0.0457712 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0495175 | Absent |
| placenta;A;CL |
Significance: 0.0271343 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.05858819999999999 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.055924 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.0277361 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.048493800000000004 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.034535 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.048226099999999994 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.052042099999999994 | Absent |
| apTreg;D;GEO |
Significance: 0.00790418 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 0.0205201 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.0531618 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0228204 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.0448577 | Absent |
| KDNY;P0;D;En |
Significance: 0.0193541 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.0589249 | Absent |
| LVR;P0;D;En |
Significance: 0.000158596 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.0557498 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.0521755 | Absent |
| Heart;8wks;D;En |
Significance: 0.0479875 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.011400799999999999 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.017831700000000002 | Absent |
| ILC1;A;GEO |
Significance: 0.057009199999999996 | Absent |
| ILC2;A;GEO |
Significance: 0.0199886 | Absent |
| Heart;P0;D;En |
Significance: 0.0390968 | Absent |
| RTN;D1;D;En |
Significance: 0.04888769999999999 | Absent |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.0538193 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.0583378 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.04396780000000001 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0221203 | Absent |
| Muller;P12;D;En |
Significance: 0.00139747 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.055913199999999996 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.0226423 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.057520100000000005 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 0.028776799999999998 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0416616 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.044843400000000005 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0543321 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.00723656 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.040466 | Absent |
| Cell type | Modisco | Homer |
|---|---|---|
| BRN;MDL_OBLNGT;A;CL | Absent |
Significance: 0.0367852 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO | Absent |
Significance: 0.0258204 |
| RTN;A;GEO | Absent |
Significance: 0.0162841 |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.0174076 |
| iNKT;A;GEO | Absent |
Significance: 0.0342731 |
| NIH3T3_FBROBLST;D;GEO | Absent |
Significance: 0.058806399999999995 |
| ILC3_AbxGRMFree;A;GEO | Absent |
Significance: 0.041213599999999996 |
| NIH3T3;D;En | Absent |
Significance: 0.033502199999999996 |
| TSLEC_SPLND;CD8+A;GEO | Absent |
Significance: 0.0259181 |
| Fr_BRN;P0;D;En | Absent |
Significance: 0.015668 |
| Tfh_LCMV;A;CL | Absent |
Significance: 0.050237199999999996 |
| BL_CN_PHT_RCPTR;A;GEO | Absent |
Significance: 0.0524485 |
| Mammary;A;CL | Absent |
Significance: 0.029708699999999998 |
| ES;JM8.N4;Mitosis;A;GEO | Absent |
Significance: 0.0479971 |
| testis;A;CL | Absent |
Significance: 0.0526008 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.0237224 |