# Parameters
data_name = "Stat1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Stat1: #41
| Cell type | Modisco | Homer |
|---|---|---|
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 5.54125e-06 |
Significance: 0.00502644 |
| memT;CD4+;A;CL |
Significance: 0.000175569 |
Significance: 0.0134412 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 2.13029e-05 |
Significance: 0.0572673 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.000212069 |
Significance: 0.00518862 |
| LRG_INTSTN;8wks;D;En |
Significance: 0.000548836 |
Significance: 0.010884200000000002 |
| iNKT;A;GEO |
Significance: 3.30885e-06 |
Significance: 0.013552400000000001 |
| prePLSM_B;A;GEO |
Significance: 0.000988332 |
Significance: 0.043316900000000005 |
| plasmaB;A;CL |
Significance: 0.00034596599999999996 |
Significance: 0.0228485 |
| B;B220_CD43;A;GEO |
Significance: 0.013257699999999999 |
Significance: 0.0062295 |
| DC_LPS;2h;A;GEO |
Significance: 0.00029824 |
Significance: 0.00320908 |
| Tfh_mut;A;CL |
Significance: 3.5524599999999996e-06 |
Significance: 0.0229345 |
| aNonTfh_mut;A;CL |
Significance: 9.87358e-06 |
Significance: 0.0235096 |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 1.2326e-06 |
Significance: 0.021716 |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 2.2365700000000002e-05 |
Significance: 0.0340211 |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 5.31704e-05 |
Significance: 0.007153100000000001 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 6.439069999999999e-05 |
Significance: 0.00960193 |
| pGMP;A;En |
Significance: 0.00959697 |
Significance: 0.0191925 |
| restingB;A;CL |
Significance: 0.00774309 |
Significance: 0.014672799999999998 |
| aB;CD180;A;CL |
Significance: 0.000826319 |
Significance: 0.037967400000000005 |
| LNG_TRM_HSC;A;CL |
Significance: 0.000832973 |
Significance: 0.0208907 |
| ILC2precrsr;A;CL |
Significance: 5.7887100000000004e-05 |
Significance: 0.0351421 |
| immatureB_SPLND;CD43-_CD11b-;D;GEO |
Significance: 0.018491099999999996 |
Significance: 0.0522766 |
| ILC1;A;CL |
Significance: 1.97496e-05 |
Significance: 0.03842430000000001 |
| NCR+ILC3+IL23;A;CL |
Significance: 3.3024300000000003e-06 |
Significance: 0.0270368 |
| CH12_QNTPLE;A;CL |
Significance: 0.0145846 |
Significance: 0.0457352 |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 3.71969e-05 |
Significance: 0.0208704 |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 4.9114300000000005e-05 |
Significance: 0.018244299999999998 |
| LNG;8wks;D;En |
Significance: 0.0014544 |
Significance: 0.021140799999999998 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.00207278 |
Significance: 0.0235985 |
| ILC2+IL33+IL25;A;GEO |
Significance: 7.27036e-05 |
Significance: 0.026561599999999998 |
| ILC2;A;GEO |
Significance: 9.35841e-06 |
Significance: 0.0068461 |
| ILC3;A;GEO |
Significance: 2.58265e-05 |
Significance: 0.00703321 |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 3.2937e-06 |
Significance: 0.00197029 |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 1.77632e-06 |
Significance: 0.011189 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 5.88091e-05 |
Significance: 0.0008565469999999999 |
| TEff_SPLND;CD8+;A;GEO |
Significance: 1.7377e-05 |
Significance: 0.0317024 |
| TExh_SPLND;CD8+;A;GEO |
Significance: 1.41716e-05 |
Significance: 0.00256677 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 2.40081e-06 |
Significance: 0.00546092 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 5.766960000000001e-06 |
Significance: 0.010112200000000002 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 6.88245e-06 |
Significance: 0.027964599999999996 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 6.396650000000001e-07 |
Significance: 0.00438535 |
Unique Cell types only TF-MoDISco finds Stat1: #160
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.00013735399999999999 | Absent |
| naiveCD8;A;CL |
Significance: 0.00015265 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.00106843 | Absent |
| NK_SPLND;A;CL |
Significance: 5.9413599999999996e-05 | Absent |
| proB;A;CL |
Significance: 0.0194126 | Absent |
| preB;A;CL |
Significance: 0.00703829 | Absent |
| immatureB;A;CL |
Significance: 0.00354198 | Absent |
| matureB;A;CL |
Significance: 0.00348489 | Absent |
| MZ_B;A;CL |
Significance: 0.00846574 | Absent |
| B1_B;A;CL |
Significance: 0.00189095 | Absent |
| GC_B;A;CL |
Significance: 0.00861732 | Absent |
| aB_LPS;A;CL |
Significance: 0.016779 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.000534439 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.0008566110000000001 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.0007392439999999999 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.00855548 | Absent |
| Mast;A;CL |
Significance: 6.30455e-05 | Absent |
| BSPHL;A;CL |
Significance: 0.0005174730000000001 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.00546422 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 5.53137e-06 | Absent |
| NTRPHL;A;CL |
Significance: 6.993220000000001e-05 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0007036439999999999 | Absent |
| Tfh;A;CL |
Significance: 0.00016979700000000001 | Absent |
| aNonTfh;A;CL |
Significance: 1.9764000000000003e-05 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.001281 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 2.06464e-05 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 7.9128e-06 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 8.208299999999999e-05 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.000572116 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 8.83337e-05 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.000197629 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.00012366700000000002 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 5.89166e-05 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 5.6717799999999994e-05 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.000147314 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00013966600000000001 | Absent |
| DC_BMD;A;CL |
Significance: 2.74596e-07 | Absent |
| MCRPHG;A;CL |
Significance: 0.00577965 | Absent |
| Erythroblast;A;CL |
Significance: 0.000141381 | Absent |
| DP;A;CL |
Significance: 9.772909999999999e-05 | Absent |
| DP3a;A;CL |
Significance: 2.37019e-05 | Absent |
| DP3b;A;CL |
Significance: 5.56236e-06 | Absent |
| ISP;A;CL |
Significance: 0.000440601 | Absent |
| ES;MEF;A;CL |
Significance: 0.000175988 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.000762295 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.00157445 | Absent |
| LNG;A;CL |
Significance: 0.0010665 | Absent |
| Muscle;A;CL |
Significance: 0.00174322 | Absent |
| Heart;D;En |
Significance: 0.00141442 | Absent |
| Adipose;A;CL |
Significance: 0.000225979 | Absent |
| Mammary;A;CL |
Significance: 0.00952948 | Absent |
| Adrenal;A;CL |
Significance: 4.39971e-05 | Absent |
| placenta;A;CL |
Significance: 0.00016649299999999998 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.00514843 | Absent |
| STMCH;A;CL |
Significance: 0.00485341 | Absent |
| PNCRS;A;CL |
Significance: 0.000893913 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0133799 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.0115397 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00309357 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.0005114469999999999 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 5.78161e-06 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 5.9145e-05 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.0009326289999999999 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.000788773 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 3.50854e-05 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.000643782 | Absent |
| ILC2_Nippo;A;CL |
Significance: 7.2651e-06 | Absent |
| ILC2;A;CL |
Significance: 0.0009107680000000001 | Absent |
| Th2_nippo;A;CL |
Significance: 0.00145708 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.00121065 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0208483 | Absent |
| wCH12;A;CL |
Significance: 0.0561991 | Absent |
| CH12;med14;A;CL |
Significance: 0.00231603 | Absent |
| wCH12_drug;A;CL |
Significance: 0.0180162 | Absent |
| CLP;A;CL |
Significance: 0.00160767 | Absent |
| NTRPHL;A;GEO |
Significance: 9.91991e-05 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.00130534 | Absent |
| ILC1;A;GEO |
Significance: 3.37136e-05 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.000105113 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.000769797 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 5.37381e-06 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 1.64997e-05 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 1.20543e-05 | Absent |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 2.6535e-06 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 2.93199e-06 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.000325997 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00143097 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 6.78624e-07 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 1.08541e-05 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 1.6771e-06 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 5.213439999999999e-05 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 7.59088e-07 | Absent |
| aB;A;GEO |
Significance: 0.000345505 | Absent |
| B_SPLND;A;GEO |
Significance: 0.00801835 | Absent |
| preB_BMD;A;GEO |
Significance: 0.00194026 | Absent |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.00744205 | Absent |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.000225145 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.00334533 | Absent |
| AML;AE9a;A;GEO |
Significance: 8.9336e-06 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 0.0007342630000000001 | Absent |
| DC_pBMD;A;GEO |
Significance: 0.0036585000000000003 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 2.83225e-05 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.000200384 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.0007244860000000001 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 0.00147885 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.00115558 | Absent |
| NPC;G4;A;GEO |
Significance: 0.0012937 | Absent |
| Corticotrope;A;GEO |
Significance: 0.000560706 | Absent |
| Melanotrope;A;GEO |
Significance: 0.000179885 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.0007293369999999999 | Absent |
| pMeg;A;En |
Significance: 0.0114869 | Absent |
| EPP;A;En |
Significance: 0.00022858200000000001 | Absent |
| MegEP;A;CL |
Significance: 1.9230399999999998e-05 | Absent |
| pErythroblast;A;En |
Significance: 1.9434e-06 | Absent |
| MegP;A;En |
Significance: 0.00930462 | Absent |
| pCMP;A;CL |
Significance: 0.00365442 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.000287622 | Absent |
| DC;A;En |
Significance: 0.00209458 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.000700325 | Absent |
| LVR;8wks;D;GEO |
Significance: 0.000658481 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.00173081 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 6.8002e-05 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 2.61579e-05 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.000133625 | Absent |
| Treg;CD4+_CD25+;D;GEO |
Significance: 3.4088600000000004e-05 | Absent |
| apCD4Eff;D;GEO |
Significance: 2.33491e-05 | Absent |
| apTreg;D;GEO |
Significance: 2.8692e-06 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00011667 | Absent |
| FBRBLST;8wks;D;En |
Significance: 1.6880900000000003e-06 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 3.7569800000000005e-06 | Absent |
| KDNY;P0;D;En |
Significance: 0.0009243789999999999 | Absent |
| KDNY;8wks;D;En |
Significance: 0.00048341 | Absent |
| LVR;8wks;D;En |
Significance: 0.00072946 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 4.3687600000000005e-05 | Absent |
| LNG;P0;D;En |
Significance: 0.00892061 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.000955588 | Absent |
| Heart;8wks;D;En |
Significance: 0.00158459 | Absent |
| Heart;P0;D;En |
Significance: 0.000318031 | Absent |
| apThEff;CD4+;8wks;D;En. |
Significance: 1.07376e-05 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 2.43216e-06 | Absent |
| apTreg;8wk;D;En |
Significance: 2.9105099999999998e-06 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 1.65006e-05 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 2.83713e-05 | Absent |
| immatureB_SPLND;CD43-_CD11b-;D;En |
Significance: 0.00311991 | Absent |
| Muller;P12;D;En |
Significance: 0.00134239 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.033236199999999994 | Absent |
| STMCH;P0;D;En |
Significance: 0.00628824 | Absent |
| Spleen;8wks;D;En |
Significance: 0.000760668 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.00034779699999999995 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00038866599999999997 | Absent |
| A20;B-lymphoma;D;En |
Significance: 0.00428334 | Absent |
| AML;D;En |
Significance: 0.0104514 | Absent |
| CH12.LX;D;En |
Significance: 0.046259800000000004 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 6.14949e-06 | Absent |
| MEL;D;En |
Significance: 5.2375e-05 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 8.42626e-05 | Absent |
| NIH3T3;D;En |
Significance: 0.00115923 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.00142954 | Absent |
| MN1;D;En |
Significance: 0.000277465 | Absent |
| 3T3-L1;D;En |
Significance: 0.00068544 | Absent |
