# Parameters
data_name = "Irf7"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Irf7: #70
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.000204086 |
Significance: 0.0234563 |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 3.4306999999999995e-05 |
Significance: 0.017084000000000002 |
| memT;CD4+;A;CL |
Significance: 9.62811e-05 |
Significance: 0.026848700000000003 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 7.04832e-05 |
Significance: 0.0444205 |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 2.9649299999999997e-05 |
Significance: 6.74542e-05 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 7.66771e-05 |
Significance: 0.030514999999999997 |
| immatureB;A;CL |
Significance: 0.00291631 |
Significance: 0.0155891 |
| iNKT;A;GEO |
Significance: 0.000112963 |
Significance: 0.0373914 |
| LRG_INTSTN;8wks;D;En |
Significance: 9.24857e-05 |
Significance: 5.18783e-05 |
| prePLSM_B;A;GEO |
Significance: 0.000438416 |
Significance: 0.043316900000000005 |
| GC_B;A;CL |
Significance: 0.00390741 |
Significance: 0.010991500000000001 |
| plasmaB;A;CL |
Significance: 0.00141567 |
Significance: 0.0024582 |
| B_SPLND;A;GEO |
Significance: 0.00801835 |
Significance: 0.014244499999999998 |
| aB_LPS+IL4;A;CL |
Significance: 0.000427134 |
Significance: 0.0296557 |
| B;B220_CD43;A;GEO |
Significance: 0.017149 |
Significance: 0.000499624 |
| aB_LSP+a_d_dextran;A;CL |
Significance: 3.71854e-05 |
Significance: 0.05127869999999999 |
| aB_CD40+IL4;A;CL |
Significance: 0.0039759 |
Significance: 0.014954499999999999 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 0.00307945 |
Significance: 0.0332148 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.000402112 |
Significance: 0.0396053 |
| DC_LPS;2h;A;GEO |
Significance: 0.0009532239999999999 |
Significance: 0.00147788 |
| A20;B-lymphoma;D;En |
Significance: 0.00883268 |
Significance: 0.032345099999999995 |
| CH12.LX;D;En |
Significance: 0.00198843 |
Significance: 0.0380158 |
| Tfh;A;CL |
Significance: 0.00016342 |
Significance: 0.0490115 |
| Tfh_mut;A;CL |
Significance: 0.000148936 |
Significance: 0.022623400000000002 |
| aNonTfh_mut;A;CL |
Significance: 3.34124e-05 |
Significance: 0.00129667 |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 1.81901e-05 |
Significance: 0.0210502 |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 7.40155e-05 |
Significance: 0.000469589 |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.00024472 |
Significance: 0.0332306 |
| DC_BMD;A;CL |
Significance: 7.73516e-05 |
Significance: 0.0165205 |
| DP3a;A;CL |
Significance: 0.000125748 |
Significance: 0.00284407 |
| ThMS_MEC;Aire++;A;GEO |
Significance: 6.439069999999999e-05 |
Significance: 5.2654799999999996e-05 |
| DC_LPS;4h;A;En |
Significance: 0.00261278 |
Significance: 0.0482722 |
| pGMP;A;En |
Significance: 0.00735863 |
Significance: 0.00906137 |
| restingB;A;CL |
Significance: 0.00705912 |
Significance: 0.0124507 |
| aB;CD180;A;CL |
Significance: 0.00016773599999999998 |
Significance: 0.0374524 |
| LNG_TRM_HSC;A;CL |
Significance: 6.31673e-05 |
Significance: 0.00198504 |
| SHRT_TRM_HSC;A;CL |
Significance: 2.20767e-05 |
Significance: 0.0528509 |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.000158288 |
Significance: 0.0328978 |
| Treg;CD4+_CD25+;D;GEO |
Significance: 0.000571885 |
Significance: 0.0250497 |
| apCD4Eff;D;GEO |
Significance: 5.07321e-05 |
Significance: 0.000912241 |
| ILC2precrsr;A;CL |
Significance: 5.56788e-05 |
Significance: 0.0326189 |
| apTreg;D;GEO |
Significance: 4.3180200000000004e-05 |
Significance: 0.039390100000000004 |
| ILC2_Nippo;A;CL |
Significance: 8.264290000000001e-05 |
Significance: 0.00108289 |
| ILC1;A;CL |
Significance: 1.85999e-05 |
Significance: 0.0533475 |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00010148299999999999 |
Significance: 0.0221315 |
| immatureB_SPLND;CD43-_CD11b-;D;GEO |
Significance: 0.00902612 |
Significance: 0.0101635 |
| CH12_QNTPLE;A;CL |
Significance: 0.0106758 |
Significance: 0.00976041 |
| wCH12_drug;A;CL |
Significance: 0.0380759 |
Significance: 0.0438124 |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.000150303 |
Significance: 0.000194878 |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 1.4676099999999998e-05 |
Significance: 0.053620400000000006 |
| LNG;8wks;D;En |
Significance: 0.000126726 |
Significance: 0.0230708 |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 2.91199e-05 |
Significance: 0.000978598 |
| ILC2+IL33+IL25;A;GEO |
Significance: 1.59185e-05 |
Significance: 0.00148933 |
| ILC2;A;GEO |
Significance: 9.76643e-05 |
Significance: 0.00076358 |
| ILC3;A;GEO |
Significance: 5.6600299999999994e-05 |
Significance: 0.04493130000000001 |
| apThEff;CD4+;8wks;D;En. |
Significance: 0.000142976 |
Significance: 0.0235904 |
| naiveT;CD8+;A;GEO |
Significance: 1.64997e-05 |
Significance: 0.012169 |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 6.0397700000000006e-05 |
Significance: 0.0405631 |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 5.0793999999999995e-05 |
Significance: 4.49106e-05 |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 7.17889e-05 |
Significance: 4.9299800000000005e-06 |
| TEff_SPLND;CD8+;A;GEO |
Significance: 5.5612600000000004e-05 |
Significance: 0.00032167299999999997 |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.00012824899999999998 |
Significance: 0.00011644200000000001 |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 1.73124e-05 |
Significance: 0.000556326 |
| immatureB_SPLND;CD43-_CD11b-;D;En |
Significance: 0.0224686 |
Significance: 0.0144977 |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.000138835 |
Significance: 0.0533119 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 8.95344e-05 |
Significance: 0.000374969 |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 3.0006399999999998e-05 |
Significance: 0.00231078 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 6.2659e-05 |
Significance: 0.0227685 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 8.59131e-05 |
Significance: 0.0563812 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 6.13687e-05 |
Significance: 0.0573484 |
Unique Cell types only TF-MoDISco finds Irf7: #132
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 7.16332e-06 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.00022163 | Absent |
| NK_SPLND;A;CL |
Significance: 2.6633800000000002e-05 | Absent |
| proB;A;CL |
Significance: 0.024036099999999998 | Absent |
| preB;A;CL |
Significance: 0.00575793 | Absent |
| matureB;A;CL |
Significance: 0.00274194 | Absent |
| MZ_B;A;CL |
Significance: 0.0297245 | Absent |
| B1_B;A;CL |
Significance: 0.000905326 | Absent |
| aB_LPS;A;CL |
Significance: 0.00827274 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.00091878 | Absent |
| Mast;A;CL |
Significance: 8.35866e-06 | Absent |
| BSPHL;A;CL |
Significance: 5.27629e-05 | Absent |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 1.27975e-05 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 5.53137e-06 | Absent |
| NTRPHL;A;CL |
Significance: 3.83379e-05 | Absent |
| Tfh_LCMV;A;CL |
Significance: 3.5037100000000004e-05 | Absent |
| aNonTfh;A;CL |
Significance: 0.000115365 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 5.10343e-05 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 7.97334e-05 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 2.48759e-05 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 2.45616e-05 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.000150301 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.000210208 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 9.366459999999999e-05 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.000141117 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.000159671 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 5.6717799999999994e-05 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 8.63603e-05 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 7.743979999999999e-05 | Absent |
| MCRPHG;A;CL |
Significance: 0.004683 | Absent |
| Erythroblast;A;CL |
Significance: 2.3494000000000002e-05 | Absent |
| DP;A;CL |
Significance: 4.1608100000000006e-05 | Absent |
| DP3b;A;CL |
Significance: 3.86165e-05 | Absent |
| ISP;A;CL |
Significance: 5.13721e-05 | Absent |
| ES;MEF;A;CL |
Significance: 6.26534e-06 | Absent |
| SML_INTSTN;A;CL |
Significance: 9.98815e-05 | Absent |
| LRG_INTSTN;A;CL |
Significance: 9.229299999999999e-05 | Absent |
| LNG;A;CL |
Significance: 9.02516e-05 | Absent |
| Muscle;A;CL |
Significance: 9.38982e-05 | Absent |
| Heart;D;En |
Significance: 5.02741e-05 | Absent |
| Adipose;A;CL |
Significance: 0.000225979 | Absent |
| Mammary;A;CL |
Significance: 0.00189525 | Absent |
| Adrenal;A;CL |
Significance: 0.000130508 | Absent |
| placenta;A;CL |
Significance: 2.4670999999999998e-05 | Absent |
| SPNL_CHRD;A;CL |
Significance: 7.73583e-05 | Absent |
| STMCH;A;CL |
Significance: 2.1041399999999998e-05 | Absent |
| PNCRS;A;CL |
Significance: 4.9369899999999996e-05 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.000105949 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.00140328 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 6.10395e-05 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.016777599999999997 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.0538251 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.00138911 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 3.14269e-05 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 2.03834e-05 | Absent |
| NCR+ILC3;A;CL |
Significance: 3.27512e-05 | Absent |
| ILC2;A;CL |
Significance: 6.03031e-05 | Absent |
| Th2_nippo;A;CL |
Significance: 8.95223e-05 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 7.441669999999999e-06 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.000670939 | Absent |
| wCH12;A;CL |
Significance: 0.0207587 | Absent |
| CH12;med14;A;CL |
Significance: 0.000863635 | Absent |
| CLP;A;CL |
Significance: 0.00290886 | Absent |
| NTRPHL;A;GEO |
Significance: 5.90757e-06 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.000384781 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0457713 | Absent |
| ILC1;A;GEO |
Significance: 3.8189200000000004e-05 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 7.087800000000001e-05 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 3.08605e-05 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 2.6928800000000002e-05 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.000253165 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.000213578 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.000155887 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 6.73072e-05 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00010339399999999999 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 2.1286999999999998e-05 | Absent |
| aB;A;GEO |
Significance: 0.0010274000000000001 | Absent |
| preB_BMD;A;GEO |
Significance: 0.00326911 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 2.93159e-05 | Absent |
| AML;AE9a;A;GEO |
Significance: 3.60954e-05 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 0.00261465 | Absent |
| DC_pBMD;A;GEO |
Significance: 0.00391421 | Absent |
| ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.00674795 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 3.00485e-05 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.00036198400000000004 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 3.48696e-05 | Absent |
| BCK_SKN;A;GEO |
Significance: 3.14161e-05 | Absent |
| NPC;G4;A;GEO |
Significance: 0.00021685099999999997 | Absent |
| Corticotrope;A;GEO |
Significance: 0.0444772 | Absent |
| Melanotrope;A;GEO |
Significance: 0.0239417 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.000112509 | Absent |
| pMeg;A;En |
Significance: 0.010289 | Absent |
| EPP;A;En |
Significance: 5.4151300000000004e-05 | Absent |
| MegEP;A;CL |
Significance: 0.000192833 | Absent |
| pErythroblast;A;En |
Significance: 1.1534000000000002e-05 | Absent |
| MegP;A;En |
Significance: 0.00440092 | Absent |
| pCMP;A;CL |
Significance: 0.00354602 | Absent |
| DC;A;En |
Significance: 0.00141148 | Absent |
| LVR;8wks;D;GEO |
Significance: 1.1043900000000001e-05 | Absent |
| LNG;8wks;D;GEO |
Significance: 0.000149211 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.000297551 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 2.61579e-05 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.000133625 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00011667 | Absent |
| FBRBLST;8wks;D;En |
Significance: 2.7683000000000002e-05 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 4.871e-05 | Absent |
| KDNY;P0;D;En |
Significance: 9.428440000000001e-05 | Absent |
| KDNY;8wks;D;En |
Significance: 0.000315423 | Absent |
| LVR;8wks;D;En |
Significance: 0.000141526 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.000189093 | Absent |
| LNG;P0;D;En |
Significance: 4.2494300000000004e-05 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 7.191149999999999e-05 | Absent |
| Heart;8wks;D;En |
Significance: 0.00013277 | Absent |
| Heart;P0;D;En |
Significance: 1.11955e-05 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 9.37873e-05 | Absent |
| apTreg;8wk;D;En |
Significance: 0.000117665 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 2.7870100000000003e-05 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.00018343 | Absent |
| Muller;P12;D;En |
Significance: 0.000313766 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.00864142 | Absent |
| STMCH;P0;D;En |
Significance: 0.000634334 | Absent |
| Spleen;8wks;D;En |
Significance: 0.00194823 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.000179027 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00018161900000000002 | Absent |
| AML;D;En |
Significance: 0.00722468 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.00070193 | Absent |
| MEL;D;En |
Significance: 0.000147116 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.0009506580000000001 | Absent |
| NIH3T3;D;En |
Significance: 0.00011966200000000001 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 5.83078e-05 | Absent |
| MN1;D;En |
Significance: 0.034923 | Absent |
| 3T3-L1;D;En |
Significance: 0.000100252 | Absent |
