# Parameters
data_name = "Rela"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:31:05,753 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Cell type | Modisco | Homer |
---|---|---|
Th17;CD4+;A;CL |
Significance: 0.000115792 |
Significance: 0.000655526 |
Spleen;8wks;D;En |
Significance: 0.00016035 |
Significance: 0.00179082 |
B1_B;A;CL |
Significance: 0.0006354269999999999 |
Significance: 0.00235508 |
aB_LPS;A;CL |
Significance: 0.00017994200000000002 |
Significance: 0.029232099999999997 |
aB_LPS+IL4;A;CL |
Significance: 0.000460477 |
Significance: 0.032685200000000005 |
aB_LPS+IL21;A;CL |
Significance: 0.00116949 |
Significance: 0.00359816 |
aB_LSP+a_d_dextran;A;CL |
Significance: 3.1568e-05 |
Significance: 0.036077 |
MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 2.91933e-05 |
Significance: 0.00041868900000000003 |
DC_LPS;6h;A;GEO |
Significance: 2.2760300000000003e-05 |
Significance: 0.00016789799999999998 |
DC_LPS;2h;A;GEO |
Significance: 1.42161e-05 |
Significance: 0.000256987 |
CH12.LX;D;En |
Significance: 0.000382348 |
Significance: 0.000242613 |
3T3-L1;D;En |
Significance: 1.7110499999999998e-05 |
Significance: 0.0277942 |
Tfh;A;CL |
Significance: 0.000564808 |
Significance: 0.0145077 |
Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 2.14432e-05 |
Significance: 0.0178798 |
naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.0007463410000000001 |
Significance: 0.03425569999999999 |
CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.00122823 |
Significance: 0.0346749 |
SKN_EPTHL;A;GEO |
Significance: 0.00488147 |
Significance: 0.0314457 |
CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.000170038 |
Significance: 0.00145687 |
DC_BMD;A;CL |
Significance: 2.46598e-05 |
Significance: 0.000136754 |
ThMS_MEC;Aire++;A;GEO |
Significance: 0.000607725 |
Significance: 0.0110938 |
Mammary_BptfKO;A;GEO |
Significance: 7.497360000000001e-06 |
Significance: 0.034128399999999996 |
DC_LPS;4h;A;En |
Significance: 4.12488e-06 |
Significance: 0.000251154 |
DC;A;En |
Significance: 8.820709999999999e-07 |
Significance: 0.00057331 |
BRN;MDL_OBLNGT;A;CL |
Significance: 0.00911466 |
Significance: 0.0433676 |
BRN;CRBLM;A;CL |
Significance: 0.00114412 |
Significance: 0.030731400000000002 |
aB;CD180;A;CL |
Significance: 0.000993982 |
Significance: 0.000558578 |
gamma_delta_TCR_MCR;A;CL |
Significance: 7.388409999999999e-05 |
Significance: 0.00216753 |
apCD4Eff;D;GEO |
Significance: 0.000295991 |
Significance: 0.00445137 |
ILC2precrsr;A;CL |
Significance: 0.00030370799999999997 |
Significance: 0.015071200000000002 |
NCR+ILC3;A;CL |
Significance: 3.84092e-05 |
Significance: 0.000304321 |
ILC2_Nippo;A;CL |
Significance: 7.86211e-06 |
Significance: 0.000152067 |
NCR+ILC3+IL23;A;CL |
Significance: 8.31217e-05 |
Significance: 0.00265741 |
ILC2;A;CL |
Significance: 0.0006648719999999999 |
Significance: 0.00103676 |
Th2_nippo;A;CL |
Significance: 3.68803e-05 |
Significance: 0.000415502 |
aB_LPS+IL4_24h;A;CL |
Significance: 0.000391954 |
Significance: 0.026940499999999996 |
aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 0.0511197 |
Significance: 0.00162016 |
CH12_QNTPLE;A;CL |
Significance: 0.00016130799999999998 |
Significance: 0.000294479 |
wCH12;A;CL |
Significance: 0.00026613 |
Significance: 0.00059518 |
CH12;med14;A;CL |
Significance: 0.00014414200000000002 |
Significance: 0.00567904 |
wCH12_drug;A;CL |
Significance: 0.00020409 |
Significance: 0.00023418400000000002 |
Mammary_GLND;A;GEO |
Significance: 0.0352639 |
Significance: 0.00455425 |
ILC2+IL33+IL25;A;GEO |
Significance: 0.000321742 |
Significance: 0.000208819 |
ILC1;A;GEO |
Significance: 8.66206e-05 |
Significance: 8.64836e-05 |
ILC2;A;GEO |
Significance: 0.000224035 |
Significance: 0.0009928060000000002 |
ILC3;A;GEO |
Significance: 0.00018702900000000001 |
Significance: 0.00112348 |
ILC1_AbxGRMFree;A;GEO |
Significance: 4.15783e-05 |
Significance: 0.00334384 |
ILC2_AbxGRMFree;A;GEO |
Significance: 7.79467e-05 |
Significance: 0.024428599999999998 |
ILC3_AbxGRMFree;A;GEO |
Significance: 2.3437200000000002e-06 |
Significance: 0.0236472 |
abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.000357456 |
Significance: 0.00281586 |
T_LCMV;CD8+;D33;A;GEO |
Significance: 0.000220153 |
Significance: 0.000268776 |
T_LCMV;CD8+;D35;A;GEO |
Significance: 0.00445085 |
Significance: 0.00227756 |
Cell type | Modisco | Homer |
---|---|---|
memT;CD4+;A;CL |
Significance: 0.00671967 | Absent |
NK_SPLND;A;CL |
Significance: 0.000453005 | Absent |
proB;A;CL |
Significance: 0.00346707 | Absent |
immatureB;A;CL |
Significance: 0.00374941 | Absent |
matureB;A;CL |
Significance: 0.00147969 | Absent |
MZ_B;A;CL |
Significance: 0.00252021 | Absent |
GC_B;A;CL |
Significance: 0.040333600000000004 | Absent |
plasmaB;A;CL |
Significance: 0.0174267 | Absent |
aB_CD40+IL4;A;CL |
Significance: 0.000203584 | Absent |
Mast;A;CL |
Significance: 0.00827508 | Absent |
ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.0347332 | Absent |
NTRPHL;A;CL |
Significance: 3.91498e-05 | Absent |
Tfh_LCMV;A;CL |
Significance: 0.00453941 | Absent |
aNonTfh;A;CL |
Significance: 0.000266747 | Absent |
aNonTfh_mut;A;CL |
Significance: 0.000165088 | Absent |
Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00012145 | Absent |
naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.00132209 | Absent |
largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.0370568 | Absent |
smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00562257 | Absent |
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00044616800000000004 | Absent |
CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.014542700000000002 | Absent |
CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.0119274 | Absent |
CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.00558539 | Absent |
CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.00365458 | Absent |
CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.00163224 | Absent |
CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00167387 | Absent |
DP;A;CL |
Significance: 0.022956999999999998 | Absent |
ES;MEF;A;CL |
Significance: 0.00847166 | Absent |
LRG_INTSTN;A;CL |
Significance: 0.0279943 | Absent |
LNG;A;CL |
Significance: 0.0358144 | Absent |
Mammary;A;CL |
Significance: 6.15508e-06 | Absent |
placenta;A;CL |
Significance: 0.00355193 | Absent |
NRV;Eye-OPTC;A;CL |
Significance: 0.053011699999999995 | Absent |
restingB;A;CL |
Significance: 6.0168900000000006e-05 | Absent |
gamma_delta_TCR;A;CL |
Significance: 2.48254e-05 | Absent |
gamma_delta_TCR_M-S-;A;CL |
Significance: 0.00047432800000000004 | Absent |
NK;IL2+IL12+;A;CL |
Significance: 0.000842764 | Absent |
ILC1;A;CL |
Significance: 0.00010214399999999999 | Absent |
mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.000510204 | Absent |
NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0182982 | Absent |
NTRPHL;A;GEO |
Significance: 0.00983407 | Absent |
ES;E14;A;GEO |
Significance: 0.000331686 | Absent |
ES;F1216;A;GEO |
Significance: 0.012332 | Absent |
ES;v6.5;A;GEO |
Significance: 0.0535869 | Absent |
naiveT;CD8+;A;GEO |
Significance: 0.000428208 | Absent |
T_LCMV;CD8+;D8;A;GEO |
Significance: 0.000189601 | Absent |
TEff_SPLND;CD8+;A;GEO |
Significance: 0.0006744230000000001 | Absent |
TExh_SPLND;CD8+;A;GEO |
Significance: 0.000654092 | Absent |
TSLEC_SPLND;CD8+A;GEO |
Significance: 9.97778e-05 | Absent |
naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.00625859 | Absent |
Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0006964569999999999 | Absent |
T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.000829173 | Absent |
T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00117592 | Absent |
T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 9.350780000000001e-05 | Absent |
T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.000101711 | Absent |
T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.000113834 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.000466961 | Absent |
memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 7.28925e-05 | Absent |
memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0203582 | Absent |
iNKT;A;GEO |
Significance: 0.00084136 | Absent |
aB;A;GEO |
Significance: 0.000288209 | Absent |
prePLSM_B;A;GEO |
Significance: 0.000515312 | Absent |
B_SPLND;A;GEO |
Significance: 0.00601142 | Absent |
preB_BMD;A;GEO |
Significance: 0.038008 | Absent |
B;B220_CD43;A;GEO |
Significance: 0.059453399999999997 | Absent |
ENDRM_ESD;A;GEO |
Significance: 0.0232054 | Absent |
ROD_PHT_RCPTR_RTN;A;GEO |
Significance: 0.00329116 | Absent |
BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.00642116 | Absent |
CN_PHT_RCPTR;A;GEO |
Significance: 0.0170462 | Absent |
wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.024772400000000003 | Absent |
npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.05502080000000001 | Absent |
wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.000113936 | Absent |
wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0475444 | Absent |
npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0156959 | Absent |
wES;posterior;1;E9.5;A;GEO |
Significance: 0.0398098 | Absent |
wES;posterior;1;E8.5;A;GEO |
Significance: 0.0129179 | Absent |
npES;posterior_delA;E8.5;A;GEO |
Significance: 0.00267896 | Absent |
wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.00021945099999999998 | Absent |
NPC;F129;A;GEO |
Significance: 0.021906799999999997 | Absent |
iPV_NRN;A;GEO |
Significance: 0.0121823 | Absent |
G_NRN_P;A;GEO |
Significance: 0.00165905 | Absent |
wES;GRM;E16.5;A;GEO |
Significance: 0.0440615 | Absent |
ES;ZhBTc4;untreated;A;GEO |
Significance: 0.022741 | Absent |
ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.0278926 | Absent |
pMeg;A;En |
Significance: 0.039751999999999996 | Absent |
MegP;A;En |
Significance: 0.0358327 | Absent |
ES;ZhBTc4;1;D;GEO |
Significance: 0.000314628 | Absent |
T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00036506099999999997 | Absent |
naiveT_SPLND;CD4+;D;GEO |
Significance: 6.08533e-05 | Absent |
wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.000417974 | Absent |
ES;C57BL_6J;R1;D;En |
Significance: 0.0230102 | Absent |
FBRBLST;8wks;D;En |
Significance: 3.66581e-05 | Absent |
3T3-L1;FBRBLST;D;En |
Significance: 0.000898798 | Absent |
wES;RTN;E11.5;D;En |
Significance: 0.0202641 | Absent |
wES;MSDRM;E11.5;D;En |
Significance: 0.027624 | Absent |
wES.Fr_BRN;E14.4;D;En |
Significance: 0.00031893 | Absent |
Hnd_BRN;P0;D;En |
Significance: 0.0136208 | Absent |
wES;Hnd_BRN;E11.5;D;En |
Significance: 0.00215529 | Absent |
wES;Hnd_BRN;E14.5;D;En |
Significance: 0.015443700000000001 | Absent |
wES;Md_BRN;E14.4;D;En |
Significance: 0.00228267 | Absent |
wES;Md_BRN;E11.5;D;En |
Significance: 0.000492866 | Absent |
wES;limb;E14.5;D;En |
Significance: 0.00153811 | Absent |
wES;limb;E11.5;D;En |
Significance: 0.0108493 | Absent |
wES;Fr_lmb;E11.5;D;En |
Significance: 0.020263999999999997 | Absent |
wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00238693 | Absent |
wES;FaceP;E14.5;D;En |
Significance: 0.00673432 | Absent |
wES;NRL_Tube;E11.5;D;En |
Significance: 0.000228291 | Absent |
SKLTL_Muscle;8wks;D;En |
Significance: 0.00226855 | Absent |
3134_mammaryADNCRCNM;D;En |
Significance: 0.000141424 | Absent |
MEL_Znc_di-cl;24h;D;En |
Significance: 0.00010742899999999999 | Absent |
MN1;D;En |
Significance: 0.019487099999999997 | Absent |
Cell type | Modisco | Homer |
---|---|---|
MPP;A;CL | Absent |
Significance: 0.055461800000000006 |
NPC;mE6;A;GEO | Absent |
Significance: 0.05460790000000001 |
apThEff;CD4+;8wks;D;En. | Absent |
Significance: 0.010885700000000002 |
Treg;CD4+_CD25+;D;GEO | Absent |
Significance: 0.000700918 |
iVIP_NRN;A;GEO | Absent |
Significance: 0.0166756 |
apTreg;D;GEO | Absent |
Significance: 0.000542213 |
immatureB_SPLND;CD43-_CD11b-;D;GEO | Absent |
Significance: 0.0012963 |
apTreg;8wk;D;En | Absent |
Significance: 0.00171879 |
immatureB_SPLND;CD43-_CD11b-;D;En | Absent |
Significance: 0.00243385 |
Tfh_mut;A;CL | Absent |
Significance: 0.000600732 |