# Parameters
data_name = "Nfib"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Nfib: #6
| Cell type | Modisco | Homer |
|---|---|---|
| SKLTL_Muscle;8wks;D;En |
Significance: 0.000117614 |
Significance: 0.045946100000000004 |
| LVR;8wks;D;GEO |
Significance: 0.000940753 |
Significance: 0.025825400000000002 |
| CRBLM;D;En |
Significance: 0.00156285 |
Significance: 0.015109799999999998 |
| G_NRN_P;A;GEO |
Significance: 2.18037e-06 |
Significance: 0.00192108 |
| WHL_BRN;8wks;D;GEO |
Significance: 8.7031e-05 |
Significance: 0.00817063 |
| Muscle;A;CL |
Significance: 1.23594e-05 |
Significance: 0.019500999999999998 |
Unique Cell types only TF-MoDISco finds Nfib: #167
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.00012371799999999998 | Absent |
| naiveCD8;A;CL |
Significance: 3.6431999999999997e-07 | Absent |
| memT;CD4+;A;CL |
Significance: 0.00043469900000000003 | Absent |
| Th17;CD4+;A;CL |
Significance: 1.65978e-05 | Absent |
| NK_SPLND;A;CL |
Significance: 8.215459999999999e-05 | Absent |
| proB;A;CL |
Significance: 0.0025896 | Absent |
| preB;A;CL |
Significance: 0.0522317 | Absent |
| immatureB;A;CL |
Significance: 0.00136018 | Absent |
| matureB;A;CL |
Significance: 0.00072447 | Absent |
| plasmaB;A;CL |
Significance: 8.09663e-05 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.000588665 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.00297594 | Absent |
| Mast;A;CL |
Significance: 6.8706e-05 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.000166617 | Absent |
| Tfh;A;CL |
Significance: 0.021386900000000004 | Absent |
| aNonTfh_mut;A;CL |
Significance: 7.79931e-05 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00770569 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00605874 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 1.0813499999999999e-05 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 7.308e-05 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.000102964 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 1.6690400000000003e-06 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.00016515 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.00567937 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.0016856999999999998 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.000119301 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 6.30629e-05 | Absent |
| DC_BMD;A;CL |
Significance: 0.00481469 | Absent |
| Erythroblast;A;CL |
Significance: 0.00115195 | Absent |
| DP;A;CL |
Significance: 4.43102e-05 | Absent |
| DP3a;A;CL |
Significance: 0.0211114 | Absent |
| DP3b;A;CL |
Significance: 3.02846e-06 | Absent |
| ISP;A;CL |
Significance: 0.00583046 | Absent |
| ES;MEF;A;CL |
Significance: 8.447710000000001e-06 | Absent |
| SML_INTSTN;A;CL |
Significance: 1.2693600000000001e-08 | Absent |
| LRG_INTSTN;A;CL |
Significance: 1.1624399999999999e-08 | Absent |
| LNG;A;CL |
Significance: 2.02198e-09 | Absent |
| Heart;D;En |
Significance: 4.16672e-05 | Absent |
| Mammary;A;CL |
Significance: 1.11484e-05 | Absent |
| Adrenal;A;CL |
Significance: 5.18121e-05 | Absent |
| SPNL_CHRD;A;CL |
Significance: 5.00941e-07 | Absent |
| STMCH;A;CL |
Significance: 0.0104962 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 2.53003e-06 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 1.76608e-07 | Absent |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.00142611 | Absent |
| BRN;PTMN;A;CL |
Significance: 2.43409e-07 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 5.3794199999999996e-08 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 5.29643e-08 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.000150873 | Absent |
| restingB;A;CL |
Significance: 0.00010180299999999999 | Absent |
| aB;CD180;A;CL |
Significance: 0.00207327 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 1.25655e-06 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 1.94056e-05 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.000140414 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.00143222 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.010373100000000001 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.000128272 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.000430977 | Absent |
| ILC2_Nippo;A;CL |
Significance: 2.90157e-05 | Absent |
| ILC1;A;CL |
Significance: 0.00181654 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.00163277 | Absent |
| ILC2;A;CL |
Significance: 0.00185726 | Absent |
| CLP;A;CL |
Significance: 0.000458206 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.00184782 | Absent |
| Mammary_GLND;A;GEO |
Significance: 1.5458499999999998e-05 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 3.00201e-05 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 1.31119e-09 | Absent |
| ILC1;A;GEO |
Significance: 0.0006627919999999999 | Absent |
| ILC2;A;GEO |
Significance: 0.000529442 | Absent |
| ILC3;A;GEO |
Significance: 0.000161761 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.00343413 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.00823234 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 2.8139699999999998e-05 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.000615717 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.00181411 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.00431033 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.00175031 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 3.63963e-05 | Absent |
| preB_BMD;A;GEO |
Significance: 0.00036589 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.000298652 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.014515799999999999 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.00737512 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 0.0104969 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 2.64407e-06 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.00678513 | Absent |
| NPC;F129;A;GEO |
Significance: 0.00232045 | Absent |
| NPC;G4;A;GEO |
Significance: 5.54994e-06 | Absent |
| NPC;Ch13;A;GEO |
Significance: 5.822229999999999e-05 | Absent |
| NPC;mE6;A;GEO |
Significance: 0.000106104 | Absent |
| ePyramidal_NRN;A;GEO |
Significance: 0.000247587 | Absent |
| iPV_NRN;A;GEO |
Significance: 8.773810000000001e-06 | Absent |
| iVIP_NRN;A;GEO |
Significance: 2.1018400000000002e-05 | Absent |
| eCortical_NRN;A;GEO |
Significance: 0.00158652 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 1.9749e-06 | Absent |
| Corticotrope;A;GEO |
Significance: 3.1748800000000003e-05 | Absent |
| Melanotrope;A;GEO |
Significance: 4.48753e-07 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 4.87701e-06 | Absent |
| EPP;A;En |
Significance: 2.5034400000000002e-05 | Absent |
| MegEP;A;CL |
Significance: 6.850440000000001e-07 | Absent |
| pErythroblast;A;En |
Significance: 0.05680319999999999 | Absent |
| MegP;A;En |
Significance: 1.18399e-07 | Absent |
| pCMP;A;CL |
Significance: 0.00149908 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.019187799999999998 | Absent |
| DC;A;En |
Significance: 1.41292e-05 | Absent |
| ES;ZhBTc4;1;D;GEO |
Significance: 0.0175673 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 6.350409999999999e-06 | Absent |
| LNG;8wks;D;GEO |
Significance: 4.07187e-07 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 9.395359999999999e-07 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00030868299999999997 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 6.21962e-05 | Absent |
| apCD4Eff;D;GEO |
Significance: 5.3986099999999995e-05 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.0140326 | Absent |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.00198568 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.0102602 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.00027058 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.00164895 | Absent |
| FBRBLST;8wks;D;En |
Significance: 1.77193e-06 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 8.82648e-05 | Absent |
| KDNY;P0;D;En |
Significance: 0.000553866 | Absent |
| KDNY;8wks;D;En |
Significance: 6.752569999999999e-06 | Absent |
| LVR;8wks;D;En |
Significance: 1.24326e-05 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.0159486 | Absent |
| LVR;P0;D;En |
Significance: 0.000311189 | Absent |
| LNG;8wks;D;En |
Significance: 8.363450000000001e-05 | Absent |
| LNG;P0;D;En |
Significance: 0.000104919 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 3.26781e-07 | Absent |
| Heart;8wks;D;En |
Significance: 5.36799e-05 | Absent |
| Heart;P0;D;En |
Significance: 0.00153709 | Absent |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.00121657 | Absent |
| Adipose;D;En |
Significance: 0.000241224 | Absent |
| RTN;D1;D;En |
Significance: 0.000326026 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.000245922 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 1.01359e-05 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 7.96607e-06 | Absent |
| wES;MSDRM;E11.5;D;En |
Significance: 0.000483344 | Absent |
| Muller;P12;D;En |
Significance: 0.000112228 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.000150946 | Absent |
| Fr_BRN;P0;D;En |
Significance: 0.0114161 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 9.67541e-07 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.00041558800000000005 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.00567708 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 1.9314e-06 | Absent |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.000546778 | Absent |
| Md_BRN;D;En |
Significance: 0.0164237 | Absent |
| wES;WHL_BRN;E14.5;D;En |
Significance: 4.89077e-06 | Absent |
| WHL_BRN;8wks;D;En |
Significance: 0.00029477700000000003 | Absent |
| wES;Telenchephalon;D;En |
Significance: 0.000301348 | Absent |
| wES;limb;E14.5;D;En |
Significance: 0.00020663599999999998 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.000496328 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 1.7598499999999998e-05 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00482251 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.00647144 | Absent |
| wES;FaceP;E11.5;D;En |
Significance: 1.93498e-05 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 1.4988299999999998e-05 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 6.30553e-08 | Absent |
| STMCH;P0;D;En |
Significance: 1.78805e-06 | Absent |
| Spleen;8wks;D;En |
Significance: 0.000123697 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 1.14346e-06 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.0145185 | Absent |
| AML;D;En |
Significance: 0.056116 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.000882772 | Absent |
| MEL;D;En |
Significance: 0.00885695 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.003827 | Absent |
| NIH3T3;D;En |
Significance: 0.0022898000000000003 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 1.01965e-05 | Absent |
| MN1;D;En |
Significance: 2.80752e-06 | Absent |
| 3T3-L1;D;En |
Significance: 1.36672e-05 | Absent |
Unique Cell types only Homer finds Nfib: #1
| Cell type | Modisco | Homer |
|---|---|---|
| ES;v6.5;A;GEO | Absent |
Significance: 0.0517775 |
