# Parameters
data_name = "Zfp740"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Zfp740: #18
| Cell type | Modisco | Homer |
|---|---|---|
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0270745 |
Significance: 0.0595452 |
| MegP;A;En |
Significance: 0.0454603 |
Significance: 0.0515703 |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0441142 |
Significance: 0.050379400000000005 |
| pCMP;A;CL |
Significance: 0.051884400000000004 |
Significance: 0.0429049 |
| wES;FaceP;E11.5;D;En |
Significance: 0.0405972 |
Significance: 0.040988300000000005 |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.0443848 |
Significance: 0.029619799999999998 |
| pGMP;A;En |
Significance: 0.048517199999999996 |
Significance: 0.036239099999999996 |
| BRN;PTMN;A;CL |
Significance: 0.0497985 |
Significance: 0.045002600000000004 |
| ES;129SV_Jae_C57BL6J;A;GEO |
Significance: 0.04932430000000001 |
Significance: 0.0443375 |
| Heart;P0;D;En |
Significance: 0.035427999999999994 |
Significance: 0.045816199999999994 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO |
Significance: 0.0441688 |
Significance: 0.0431926 |
| iVIP_NRN;A;GEO |
Significance: 0.0477734 |
Significance: 0.04509969999999999 |
| wES;MSDRM;E11.5;D;En |
Significance: 0.0515354 |
Significance: 0.0593952 |
| Hnd_BRN;P0;D;En |
Significance: 0.056532000000000006 |
Significance: 0.0449081 |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.0542863 |
Significance: 0.037341900000000004 |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0509344 |
Significance: 0.047848400000000006 |
| pMeg;A;En |
Significance: 0.0550673 |
Significance: 0.0430793 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.039976 |
Significance: 0.0484486 |
Unique Cell types only TF-MoDISco finds Zfp740: #147
| Cell type | Modisco | Homer |
|---|---|---|
| naiveCD8;A;CL |
Significance: 0.0505366 | Absent |
| memT;CD4+;A;CL |
Significance: 0.05175 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0415043 | Absent |
| NK_SPLND;A;CL |
Significance: 0.0255458 | Absent |
| proB;A;CL |
Significance: 0.0402295 | Absent |
| immatureB;A;CL |
Significance: 0.037165199999999995 | Absent |
| matureB;A;CL |
Significance: 0.027038099999999995 | Absent |
| B1_B;A;CL |
Significance: 0.039363300000000004 | Absent |
| aB_LPS;A;CL |
Significance: 0.050438199999999996 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 0.0421918 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 0.056662199999999996 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.040049 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 0.0519865 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.0503573 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.0497003 | Absent |
| Tfh;A;CL |
Significance: 0.042894699999999994 | Absent |
| aNonTfh;A;CL |
Significance: 0.035835900000000004 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0384592 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.0415108 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.053144000000000004 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.0432984 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.0509205 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0421782 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.0516008 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.0359958 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.0491871 | Absent |
| MCRPHG;A;CL |
Significance: 0.040631400000000005 | Absent |
| Erythroblast;A;CL |
Significance: 0.045426999999999995 | Absent |
| ISP;A;CL |
Significance: 0.0543245 | Absent |
| Muscle;A;CL |
Significance: 0.045032499999999996 | Absent |
| Heart;D;En |
Significance: 0.0440634 | Absent |
| Adrenal;A;CL |
Significance: 0.0511509 | Absent |
| testis;A;CL |
Significance: 0.041231800000000006 | Absent |
| placenta;A;CL |
Significance: 0.037957199999999996 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.016183000000000003 | Absent |
| PNCRS;A;CL |
Significance: 0.0569509 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 0.027729900000000002 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0447663 | Absent |
| BRN;OLFTRY_BLB;A;CL |
Significance: 0.034182199999999996 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.049557300000000006 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.028482599999999997 | Absent |
| restingB;A;CL |
Significance: 0.0574145 | Absent |
| SHRT_TRM_HSC;A;CL |
Significance: 0.0483499 | Absent |
| gamma_delta_TCR;A;CL |
Significance: 0.05404069999999999 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 0.0495631 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 0.040279199999999994 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.0549738 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.0370142 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 0.0442566 | Absent |
| wCH12;A;CL |
Significance: 0.026044499999999998 | Absent |
| CH12;med14;A;CL |
Significance: 0.0571711 | Absent |
| ES;J1;A;CL |
Significance: 0.054293499999999995 | Absent |
| ES;E14;A;GEO |
Significance: 0.0157248 | Absent |
| ES;F1216;A;GEO |
Significance: 0.012040100000000001 | Absent |
| ES;v6.5;A;GEO |
Significance: 0.028893799999999997 | Absent |
| RTN;A;GEO |
Significance: 0.0549899 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0539814 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.0586934 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.05741419999999999 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.0402679 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.0362851 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.048410800000000004 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.0353082 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0447574 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.029469099999999998 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.048512900000000005 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0263105 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.0464161 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0331028 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0285485 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.048162 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.0542779 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0437183 | Absent |
| B_SPLND;A;GEO |
Significance: 0.0398529 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.0425962 | Absent |
| Erythroid;Ter119+;A;GEO |
Significance: 0.0529121 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.0254748 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 0.058800599999999995 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0249231 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.057926 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.036224099999999995 | Absent |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0214605 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.0448121 | Absent |
| wES;5th_Rhmbmr;E8.5;A;GEO |
Significance: 0.0320077 | Absent |
| wES;posterior;1;E9.5;A;GEO |
Significance: 0.0398098 | Absent |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.043939099999999995 | Absent |
| npES;posterior_delC;E8.5;A;GEO |
Significance: 0.0556395 | Absent |
| BCK_SKN;A;GEO |
Significance: 0.0417688 | Absent |
| ePyramidal_NRN;A;GEO |
Significance: 0.0323513 | Absent |
| iPV_NRN;A;GEO |
Significance: 0.0450212 | Absent |
| eCortical_NRN;A;GEO |
Significance: 0.04100530000000001 | Absent |
| wES;GRM;E16.5;A;GEO |
Significance: 0.0284186 | Absent |
| Corticotrope;A;GEO |
Significance: 0.055742999999999994 | Absent |
| Melanotrope;A;GEO |
Significance: 0.0513622 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.0542134 | Absent |
| npES;ZHBTC4;doxyc;treat;A;GEO |
Significance: 0.014141899999999999 | Absent |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO |
Significance: 0.0582567 | Absent |
| Mammary_BptfKO;A;GEO |
Significance: 0.0125554 | Absent |
| EPP;A;En |
Significance: 0.0135071 | Absent |
| MegEP;A;CL |
Significance: 0.033278699999999994 | Absent |
| DC_LPS;4h;A;En |
Significance: 0.0330929 | Absent |
| DC;A;En |
Significance: 0.0530741 | Absent |
| ES;ZhBTc4;2;D;GEO |
Significance: 0.0160216 | Absent |
| ES;D0;D;GEO |
Significance: 0.023033900000000003 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.0413896 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.050689 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.045964 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.0507645 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.025800999999999998 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.05417430000000001 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 0.0577194 | Absent |
| ES;129S1_SVImJ_CJ7;D;En |
Significance: 0.014659299999999998 | Absent |
| ES;E14;D;En |
Significance: 0.0222982 | Absent |
| ES;C57BL_6J;R1;D;En |
Significance: 0.0381004 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 0.040989199999999996 | Absent |
| KDNY;P0;D;En |
Significance: 0.0314909 | Absent |
| wES;LVR;E11.5;D.;En |
Significance: 0.022285299999999997 | Absent |
| LVR;P0;D;En |
Significance: 0.0497222 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.0414365 | Absent |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 0.0531623 | Absent |
| RTN;D1;D;En |
Significance: 0.0394094 | Absent |
| wES;RTN;E11.5;D;En |
Significance: 0.0126984 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.0320924 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0449406 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.0314139 | Absent |
| Muller;P12;D;En |
Significance: 0.0207516 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.0475276 | Absent |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.0112678 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.047301199999999995 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.019355 | Absent |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.0490364 | Absent |
| wES;limb;E11.5;D;En |
Significance: 0.0539216 | Absent |
| wES;Fr_lmb;E11.5;D;En |
Significance: 0.0368019 | Absent |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.00772659 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 0.028469900000000003 | Absent |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.057249 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 0.0380796 | Absent |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.0534679 | Absent |
| Spleen;8wks;D;En |
Significance: 0.0353543 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.0480833 | Absent |
| AML;D;En |
Significance: 0.031547399999999996 | Absent |
| CH12.LX;D;En |
Significance: 0.0516069 | Absent |
| MEL;D;En |
Significance: 0.0352506 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.0480366 | Absent |
| NIH3T3;D;En |
Significance: 0.048104 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0576947 | Absent |
| 3T3-L1;D;En |
Significance: 0.0377918 | Absent |
Unique Cell types only Homer finds Zfp740: #8
| Cell type | Modisco | Homer |
|---|---|---|
| NTRPHL;A;GEO | Absent |
Significance: 0.05198150000000001 |
| LNG;8wks;D;En | Absent |
Significance: 0.0502967 |
| LNG;P0;D;En | Absent |
Significance: 0.045108800000000004 |
| STMCH;P0;D;En | Absent |
Significance: 0.05827569999999999 |
| LNG;8wks;D;GEO | Absent |
Significance: 0.0507706 |
| 416B;HMTP_SPNSN;CD34+;D;En | Absent |
Significance: 0.0500756 |
| ILC3;A;GEO | Absent |
Significance: 0.050218 |
| WHL_BRN;8wks;D;En | Absent |
Significance: 0.0289991 |
