# Parameters
data_name = "E2f7"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
load data from labcluster
Using TensorFlow backend. 2019-08-23 11:02:37,181 [WARNING] git-lfs not installed
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
TF-MoDISco is using the TensorFlow backend.
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
| Cell type | Modisco | Homer |
|---|---|---|
| wES;limb;E14.5;D;En |
Significance: 0.038375599999999996 |
Significance: 0.0420489 |
| wES;Hnd_lmb;E11.5;D;En |
Significance: 0.025400799999999998 |
Significance: 0.011555500000000002 |
| proB;A;CL |
Significance: 0.0135619 |
Significance: 0.029109899999999998 |
| wES;NRL_Tube;E11.5;D;En |
Significance: 0.0345266 |
Significance: 0.00903015 |
| SKLTL_Muscle;8wks;D;En |
Significance: 0.035519300000000004 |
Significance: 0.0348045 |
| GC_B;A;CL |
Significance: 0.0513823 |
Significance: 0.00928128 |
| ESNPHL_ex-vivo_BlbC;A;CL |
Significance: 0.0296452 |
Significance: 0.054261199999999996 |
| ENDRM_ESD;A;GEO |
Significance: 0.038250099999999995 |
Significance: 0.0224847 |
| GCN_PHT_RCPTR;A;GEO |
Significance: 0.0261038 |
Significance: 0.0133291 |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.039521600000000004 |
Significance: 0.0228679 |
| wES;3rd_Rhmbmr;E8.5;A;GEO |
Significance: 0.0415677 |
Significance: 0.017379099999999998 |
| npES;5th_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.0572112 |
Significance: 0.0171702 |
| wES;5th_Rhmbmr;E9.5;A;GEO |
Significance: 0.020271900000000002 |
Significance: 0.05297280000000001 |
| npES;5th_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.0375993 |
Significance: 0.0366832 |
| wES;posterior;1;E8.5;A;GEO |
Significance: 0.051950300000000005 |
Significance: 0.053552499999999996 |
| npES;posterior_delA;E8.5;A;GEO |
Significance: 0.0366361 |
Significance: 0.00751778 |
| wES.CRNL_NRL_CRST;E10.5;A;GEO |
Significance: 0.016981599999999996 |
Significance: 0.00811896 |
| NPC;F129;A;GEO |
Significance: 0.0103069 |
Significance: 0.0412184 |
| G_NRN_P;A;GEO |
Significance: 0.0149858 |
Significance: 0.0123567 |
| Muscle;A;CL |
Significance: 0.0415345 |
Significance: 0.0526845 |
| Mammary_BptfKO;A;GEO |
Significance: 0.0458347 |
Significance: 0.011117499999999999 |
| LNG_TRM_HSC;A;CL |
Significance: 0.0379858 |
Significance: 0.0421765 |
| wES;WHL_BRN;E14.5;D;GEO |
Significance: 0.028952600000000002 |
Significance: 0.00755563 |
| KDNY;P0;D;En |
Significance: 0.056602 |
Significance: 0.029698400000000003 |
| LNG;8wks;D;En |
Significance: 0.05563049999999999 |
Significance: 0.032366900000000004 |
| Mammary_GLND;A;GEO |
Significance: 0.030743400000000004 |
Significance: 0.012087200000000001 |
| RTN;A;GEO |
Significance: 0.0447592 |
Significance: 0.036034699999999996 |
| RTN;D1;D;En |
Significance: 0.0338472 |
Significance: 0.0319776 |
| Muller;P12;D;En |
Significance: 0.0458623 |
Significance: 0.0235926 |
| Hnd_BRN;P0;D;En |
Significance: 0.0197858 |
Significance: 0.0497301 |
| wES;Hnd_BRN;E11.5;D;En |
Significance: 0.053661 |
Significance: 0.00197378 |
| wES;Md_BRN;E11.5;D;En |
Significance: 0.018003400000000003 |
Significance: 0.053583500000000006 |
| Md_BRN;D;En |
Significance: 0.00789139 |
Significance: 0.00691764 |
| Cell type | Modisco | Homer |
|---|---|---|
| STMCH;P0;D;En |
Significance: 0.0370699 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.0226196 | Absent |
| DC_LPS;2h;A;GEO |
Significance: 0.0507026 | Absent |
| MN1;D;En |
Significance: 0.0379875 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 0.0536187 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.0371761 | Absent |
| npES;3rd_Rhmbmr_delA;E8.5;A;GEO |
Significance: 0.034485 | Absent |
| npES;3rd_Rhmbmr_delC;E8.5;A;GEO |
Significance: 0.056614300000000006 | Absent |
| largeDPprecrsr;CD4+CD8+CD69-;A;CL |
Significance: 0.044650300000000004 | Absent |
| wES;posterior;2;E9.5;A;GEO |
Significance: 0.0437302 | Absent |
| CD4+CD8intTCR+CD69+CD24+;MHC2defM;A;CL |
Significance: 0.054418600000000004 | Absent |
| iVIP_NRN;A;GEO |
Significance: 0.044203 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.031751299999999996 | Absent |
| Melanotrope;A;GEO |
Significance: 0.042792199999999996 | Absent |
| ES;ZhBTc4;untreated;A;GEO |
Significance: 0.0404154 | Absent |
| ES;JM8.N4;Mitosis;A;GEO |
Significance: 0.04191930000000001 | Absent |
| STMCH;A;CL |
Significance: 0.036769699999999995 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 0.0560403 | Absent |
| BRN;FRNTL_CRTX;A;CL |
Significance: 0.0356052 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.0332273 | Absent |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 0.0370956 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.0484906 | Absent |
| WHL_BRN;8wks;D;GEO |
Significance: 0.033967800000000006 | Absent |
| wCH12;A;CL |
Significance: 0.0408538 | Absent |
| CH12;med14;A;CL |
Significance: 0.0320335 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.0575236 | Absent |
| NTRPHL;A;GEO |
Significance: 0.053919299999999996 | Absent |
| ES;E14;A;GEO |
Significance: 0.0545853 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 0.0351531 | Absent |
| ILC2;A;GEO |
Significance: 0.0416376 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 0.0414287 | Absent |
| wES;Md_BRN;E14.4;D;En |
Significance: 0.0211217 | Absent |
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL | Absent |
Significance: 0.0585737 |
| naiveCD8;A;CL | Absent |
Significance: 0.05022 |
| memT;CD4+;A;CL | Absent |
Significance: 0.032621 |
| Th17;CD4+;A;CL | Absent |
Significance: 0.00886603 |
| preB;A;CL | Absent |
Significance: 0.042076300000000004 |
| immatureB;A;CL | Absent |
Significance: 0.0457524 |
| matureB;A;CL | Absent |
Significance: 0.013322799999999997 |
| MZ_B;A;CL | Absent |
Significance: 0.0554294 |
| plasmaB;A;CL | Absent |
Significance: 0.0389457 |
| aB_LPS+IL4;A;CL | Absent |
Significance: 0.021162 |
| Mast;A;CL | Absent |
Significance: 0.0354794 |
| BSPHL;A;CL | Absent |
Significance: 0.0122517 |
| Tfh_LCMV;A;CL | Absent |
Significance: 0.0479245 |
| Tfh;A;CL | Absent |
Significance: 0.0100191 |
| Tfh_mut;A;CL | Absent |
Significance: 0.012748899999999999 |
| aNonTfh;A;CL | Absent |
Significance: 0.05601849999999999 |
| aNonTfh_mut;A;CL | Absent |
Significance: 0.04047630000000001 |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL | Absent |
Significance: 0.00253426 |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL | Absent |
Significance: 0.053833400000000003 |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C | Absent |
Significance: 0.018678999999999998 |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL | Absent |
Significance: 0.0234034 |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL | Absent |
Significance: 0.05575940000000001 |
| MCRPHG;A;CL | Absent |
Significance: 0.014823099999999999 |
| DP3a;A;CL | Absent |
Significance: 0.00439496 |
| DP3b;A;CL | Absent |
Significance: 0.013942500000000002 |
| ISP;A;CL | Absent |
Significance: 0.0334565 |
| ES;MEF;A;CL | Absent |
Significance: 0.00244865 |
| Adipose;A;CL | Absent |
Significance: 0.0159589 |
| Mammary;A;CL | Absent |
Significance: 0.029712099999999998 |
| Adrenal;A;CL | Absent |
Significance: 0.0284389 |
| testis;A;CL | Absent |
Significance: 0.0438529 |
| placenta;A;CL | Absent |
Significance: 0.0421982 |
| gamma_delta_TCR;A;CL | Absent |
Significance: 0.00485159 |
| gamma_delta_TCR_MCR;A;CL | Absent |
Significance: 0.010631 |
| NK;IL2+IL12+;A;CL | Absent |
Significance: 0.0508473 |
| NCR+ILC3;A;CL | Absent |
Significance: 0.0322327 |
| ILC2_Nippo;A;CL | Absent |
Significance: 0.00985333 |
| ILC1;A;CL | Absent |
Significance: 0.00681544 |
| NCR+ILC3+IL23;A;CL | Absent |
Significance: 0.05670599999999999 |
| ILC2;A;CL | Absent |
Significance: 0.034114599999999995 |
| Th2_nippo;A;CL | Absent |
Significance: 0.00444589 |
| CLP;A;CL | Absent |
Significance: 0.0182283 |
| ES;F1216;A;GEO | Absent |
Significance: 0.0463466 |
| ES;v6.5;A;GEO | Absent |
Significance: 0.0101713 |
| CRBL_GRNL_Precrsr;A;GEO | Absent |
Significance: 0.00285204 |
| ILC2+IL33+IL25;A;GEO | Absent |
Significance: 0.0368021 |
| ILC1;A;GEO | Absent |
Significance: 0.0444862 |
| ILC2_AbxGRMFree;A;GEO | Absent |
Significance: 0.0313237 |
| ILC3_AbxGRMFree;A;GEO | Absent |
Significance: 0.00162314 |
| T_LCMV;CD8+;D8;A;GEO | Absent |
Significance: 0.050671 |
| T_LCMV;CD8+;D33;A;GEO | Absent |
Significance: 0.0152374 |
| TEff_SPLND;CD8+;A;GEO | Absent |
Significance: 0.0592245 |
| TExh_SPLND;CD8+;A;GEO | Absent |
Significance: 0.011892100000000001 |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO | Absent |
Significance: 0.0149033 |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO | Absent |
Significance: 0.0214267 |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO | Absent |
Significance: 0.0317179 |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO | Absent |
Significance: 0.026114 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.022738400000000002 |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO | Absent |
Significance: 0.0172768 |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO | Absent |
Significance: 0.0384664 |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO | Absent |
Significance: 0.0417674 |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO | Absent |
Significance: 0.03340119999999999 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO | Absent |
Significance: 0.014046200000000002 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.0441225 |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO | Absent |
Significance: 0.039633499999999995 |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO | Absent |
Significance: 0.05637230000000001 |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO | Absent |
Significance: 0.046603 |
| iNKT;A;GEO | Absent |
Significance: 0.052993399999999996 |
| prePLSM_B;A;GEO | Absent |
Significance: 0.00955632 |
| preB_BMD;A;GEO | Absent |
Significance: 0.0239585 |
| B;B220_CD43;A;GEO | Absent |
Significance: 0.030233 |
| MCRPHG_BMD.UnStmltd;A;GEO | Absent |
Significance: 0.056061 |
| MCRPHG_BMD.LPD_Stmltd;A;GEO | Absent |
Significance: 0.0431926 |
| AML;AE9a;A;GEO | Absent |
Significance: 0.0165799 |
| DC_LPS;6h;A;GEO | Absent |
Significance: 0.059377 |
| DC_pBMD;A;GEO | Absent |
Significance: 0.0156238 |
| ROD_PHT_RCPTR_RTN;A;GEO | Absent |
Significance: 0.029440499999999998 |
| wES;5th_Rhmbmr;E8.5;A;GEO | Absent |
Significance: 0.017852299999999998 |
| wES;posterior;1;E9.5;A;GEO | Absent |
Significance: 0.0382226 |
| npES;posterior_delC;E8.5;A;GEO | Absent |
Significance: 0.0467649 |
| NPC;G4;A;GEO | Absent |
Significance: 0.0585875 |
| NPC;mE6;A;GEO | Absent |
Significance: 0.00340224 |
| ThMS_MEC;Aire++;A;GEO | Absent |
Significance: 0.00849026 |
| npES;ZHBTC4;doxyc;treat;A;GEO | Absent |
Significance: 0.0281546 |
| npES;ZHBTC4;Brg1fl_fl;untreat;A;GEO | Absent |
Significance: 0.0116154 |
| ES;JM8.N4;Asynch;A;GEO | Absent |
Significance: 0.00868746 |
| pMeg;A;En | Absent |
Significance: 0.0430793 |
| EPP;A;En | Absent |
Significance: 0.012809399999999999 |
| pErythroblast;A;En | Absent |
Significance: 0.024593900000000002 |
| MegP;A;En | Absent |
Significance: 0.0358007 |
| pCMP;A;CL | Absent |
Significance: 0.053766499999999995 |
| DC_LPS;4h;A;En | Absent |
Significance: 0.0491665 |
| DC;A;En | Absent |
Significance: 0.00588614 |
| NIH3T3_FBROBLST;D;GEO | Absent |
Significance: 0.00759782 |
| LVR;8wks;D;GEO | Absent |
Significance: 0.0092151 |
| LNG;8wks;D;GEO | Absent |
Significance: 0.0342625 |
| naiveT_SPLND;CD4+;D;GEO | Absent |
Significance: 0.0537405 |
| Treg;CD4+_CD25+;D;GEO | Absent |
Significance: 0.00360321 |
| apTreg;D;GEO | Absent |
Significance: 0.00942314 |
| NIH3T3_FBROBLST;D;En | Absent |
Significance: 0.00381213 |
| KDNY;8wks;D;En | Absent |
Significance: 0.041436 |
| LNG;P0;D;En | Absent |
Significance: 0.029434500000000002 |
| Heart;8wks;D;En | Absent |
Significance: 0.015575299999999999 |
| Heart;P0;D;En | Absent |
Significance: 0.0423775 |
| wES;RTN;E11.5;D;En | Absent |
Significance: 0.00382411 |
| CRBLM;D;En | Absent |
Significance: 0.0219727 |
| apTreg;8wk;D;En | Absent |
Significance: 0.020237599999999998 |
| EP;c-kit+CD71+Ter119+;D;En | Absent |
Significance: 0.05372380000000001 |
| 416B_MP;CD34+;D;En | Absent |
Significance: 0.0408043 |
| immatureB_SPLND;CD43-_CD11b-;D;En | Absent |
Significance: 0.022462299999999998 |
| wES;MSDRM;E11.5;D;En | Absent |
Significance: 0.0428386 |
| Fr_BRN;P0;D;En | Absent |
Significance: 0.0534224 |
| wES;Hnd_BRN;E14.5;D;En | Absent |
Significance: 0.00166437 |
| wES;WHL_BRN;E14.5;D;En | Absent |
Significance: 0.042723199999999996 |
| wES;limb;E11.5;D;En | Absent |
Significance: 0.0292053 |
| wES;FaceP;E14.5;D;En | Absent |
Significance: 0.00954215 |
| wES;FaceP;E11.5;D;En | Absent |
Significance: 0.040994300000000004 |
| Spleen;8wks;D;En | Absent |
Significance: 0.0237892 |
| 3134_mammaryADNCRCNM;D;En | Absent |
Significance: 0.00419941 |
| 416B;HMTP_SPNSN;CD34+;D;En | Absent |
Significance: 0.0468871 |
| AML;D;En | Absent |
Significance: 0.0531244 |
| NIH3T3;D;En | Absent |
Significance: 0.0113037 |
| MTR_NRN_MN1;methyl3;D;En | Absent |
Significance: 0.0565813 |
| 3T3-L1;D;En | Absent |
Significance: 0.029042000000000002 |