# Parameters
data_name = "Mef2d"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Mef2d: #21
| Cell type | Modisco | Homer |
|---|---|---|
| SKLTL_Muscle;8wks;D;En |
Significance: 1.7181000000000003e-10 |
Significance: 1.3686200000000002e-08 |
| plasmaB;A;CL |
Significance: 7.014400000000001e-10 |
Significance: 4.84141e-05 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 3.62986e-07 |
Significance: 0.000204267 |
| MCRPHG;A;CL |
Significance: 7.94064e-11 |
Significance: 0.000264419 |
| ePyramidal_NRN;A;GEO |
Significance: 3.03292e-09 |
Significance: 9.67359e-05 |
| iPV_NRN;A;GEO |
Significance: 9.29935e-11 |
Significance: 3.62122e-11 |
| eCortical_NRN;A;GEO |
Significance: 2.66696e-08 |
Significance: 2.6513400000000002e-08 |
| Muscle;A;CL |
Significance: 1.50606e-11 |
Significance: 8.561e-06 |
| Heart;D;En |
Significance: 9.39827e-12 |
Significance: 2.14325e-12 |
| BRN;OLFTRY_BLB;A;CL |
Significance: 1.93065e-09 |
Significance: 1.2498200000000002e-06 |
| BRN;FRNTL_CRTX;A;CL |
Significance: 4.8076e-07 |
Significance: 1.34321e-11 |
| BRN;PTMN;A;CL |
Significance: 9.439e-11 |
Significance: 3.05681e-11 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 7.102460000000001e-09 |
Significance: 7.780160000000001e-10 |
| WHL_BRN;8wks;D;GEO |
Significance: 5.083059999999999e-10 |
Significance: 4.58398e-10 |
| FBRBLST;8wks;D;En |
Significance: 4.69675e-10 |
Significance: 0.000171697 |
| LNG;P0;D;En |
Significance: 3.98471e-09 |
Significance: 1.89577e-05 |
| Heart;8wks;D;En |
Significance: 1.24587e-09 |
Significance: 4.03512e-08 |
| Heart;P0;D;En |
Significance: 7.4148e-12 |
Significance: 5.05353e-11 |
| CRBLM;D;En |
Significance: 1.63507e-12 |
Significance: 3.4125999999999997e-07 |
| WHL_BRN;8wks;D;En |
Significance: 1.80675e-09 |
Significance: 1.47924e-09 |
| wES;Telenchephalon;D;En |
Significance: 3.12882e-09 |
Significance: 1.04925e-09 |
Unique Cell types only TF-MoDISco finds Mef2d: #112
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 1.46843e-09 | Absent |
| NK_SPLND;A;CL |
Significance: 7.3716700000000005e-09 | Absent |
| preB;A;CL |
Significance: 2.7084899999999997e-06 | Absent |
| immatureB;A;CL |
Significance: 2.35443e-06 | Absent |
| matureB;A;CL |
Significance: 1.05805e-08 | Absent |
| GC_B;A;CL |
Significance: 5.18945e-12 | Absent |
| aB_LPS;A;CL |
Significance: 4.2770399999999995e-09 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 9.12659e-14 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 3.10247e-11 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 2.58664e-05 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 7.40745e-09 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 2.7965999999999995e-07 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 1.4310999999999999e-05 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 5.60195e-07 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 8.74416e-10 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 1.68994e-09 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 2.5819599999999996e-09 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 1.7946500000000002e-05 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 3.60304e-05 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 1.6204000000000001e-09 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 1.6540400000000003e-10 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 3.4095999999999995e-07 | Absent |
| DC_BMD;A;CL |
Significance: 3.49258e-08 | Absent |
| DP;A;CL |
Significance: 2.5430999999999998e-05 | Absent |
| ISP;A;CL |
Significance: 9.25232e-07 | Absent |
| ES;MEF;A;CL |
Significance: 3.6079099999999997e-12 | Absent |
| Adrenal;A;CL |
Significance: 1.82055e-10 | Absent |
| placenta;A;CL |
Significance: 2.0390700000000002e-10 | Absent |
| STMCH;A;CL |
Significance: 0.0120398 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 1.21059e-07 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 3.25165e-08 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 4.95963e-06 | Absent |
| BRN;CRBLM;A;CL |
Significance: 1.04351e-06 | Absent |
| restingB;A;CL |
Significance: 1.38689e-10 | Absent |
| aB;CD180;A;CL |
Significance: 9.83272e-09 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 2.18686e-06 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 2.0650300000000003e-09 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 1.00665e-05 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 4.76529e-11 | Absent |
| ILC1;A;CL |
Significance: 1.40203e-07 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 5.62304e-08 | Absent |
| ILC2;A;CL |
Significance: 1.2391599999999999e-06 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 8.37235e-08 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 2.8945499999999997e-07 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 4.492930000000001e-09 | Absent |
| wCH12;A;CL |
Significance: 7.0455e-06 | Absent |
| CH12;med14;A;CL |
Significance: 7.254069999999999e-10 | Absent |
| wCH12_drug;A;CL |
Significance: 1.9107599999999996e-08 | Absent |
| CLP;A;CL |
Significance: 6.27449e-10 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 2.50541e-10 | Absent |
| RTN;A;GEO |
Significance: 3.9603e-09 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0224007 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 1.74266e-06 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 1.70311e-11 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 5.67999e-06 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 5.19334e-10 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 1.3744700000000001e-09 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 2.63899e-07 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 8.155e-09 | Absent |
| iNKT;A;GEO |
Significance: 5.46347e-09 | Absent |
| aB;A;GEO |
Significance: 3.9944699999999995e-08 | Absent |
| prePLSM_B;A;GEO |
Significance: 2.88464e-11 | Absent |
| preB_BMD;A;GEO |
Significance: 3.15897e-09 | Absent |
| B;B220_CD43;A;GEO |
Significance: 2.25046e-09 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 1.0068999999999998e-11 | Absent |
| DC_pBMD;A;GEO |
Significance: 7.0361e-08 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 3.1707299999999998e-12 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 4.02181e-11 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 6.29767e-11 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 2.19525e-10 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 3.64209e-08 | Absent |
| NPC;F129;A;GEO |
Significance: 3.9540699999999996e-10 | Absent |
| NPC;G4;A;GEO |
Significance: 3.22375e-11 | Absent |
| NPC;Ch13;A;GEO |
Significance: 7.4963e-12 | Absent |
| NPC;mE6;A;GEO |
Significance: 8.39182e-10 | Absent |
| iVIP_NRN;A;GEO |
Significance: 3.3193800000000003e-10 | Absent |
| Corticotrope;A;GEO |
Significance: 4.38367e-07 | Absent |
| Melanotrope;A;GEO |
Significance: 2.13614e-08 | Absent |
| MegP;A;En |
Significance: 6.21327e-08 | Absent |
| pCMP;A;CL |
Significance: 1.49998e-09 | Absent |
| DC_LPS;4h;A;En |
Significance: 1.17169e-08 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 1.2229600000000001e-14 | Absent |
| LNG;8wks;D;GEO |
Significance: 4.8545100000000004e-09 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 2.23127e-05 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 3.38342e-11 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 1.1371199999999999e-10 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 3.63128e-09 | Absent |
| KDNY;P0;D;En |
Significance: 1.90953e-08 | Absent |
| KDNY;8wks;D;En |
Significance: 7.31963e-10 | Absent |
| LNG;8wks;D;En |
Significance: 4.3850299999999996e-13 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 2.94736e-09 | Absent |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 7.00447e-11 | Absent |
| RTN;D1;D;En |
Significance: 1.1097200000000001e-05 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 4.4494e-08 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 2.00729e-13 | Absent |
| Muller;P12;D;En |
Significance: 1.8236599999999998e-07 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 7.79369e-07 | Absent |
| Fr_BRN;P0;D;En |
Significance: 7.581990000000001e-07 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 9.26671e-10 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 6.02404e-06 | Absent |
| Md_BRN;D;En |
Significance: 6.26495e-10 | Absent |
| wES;limb;E14.5;D;En |
Significance: 3.70225e-08 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 1.61947e-08 | Absent |
| STMCH;P0;D;En |
Significance: 5.89845e-08 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 4.9864399999999996e-09 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 5.8103999999999995e-06 | Absent |
| AML;D;En |
Significance: 8.82823e-13 | Absent |
| CH12.LX;D;En |
Significance: 7.83059e-10 | Absent |
| NIH3T3;D;En |
Significance: 2.4398599999999997e-12 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 4.1521699999999997e-08 | Absent |
| MN1;D;En |
Significance: 1.3935699999999998e-09 | Absent |
| 3T3-L1;D;En |
Significance: 6.63961e-10 | Absent |
