# Parameters
data_name = "Mef2c"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Mef2c: #21
| Cell type | Modisco | Homer |
|---|---|---|
| SKLTL_Muscle;8wks;D;En |
Significance: 5.74087e-09 |
Significance: 5.06401e-06 |
| plasmaB;A;CL |
Significance: 7.014400000000001e-10 |
Significance: 0.000278677 |
| MCRPHG_BMD.UnStmltd;A;GEO |
Significance: 1.2583299999999999e-07 |
Significance: 0.0006137769999999999 |
| MCRPHG;A;CL |
Significance: 2.3940000000000002e-09 |
Significance: 0.000658382 |
| ePyramidal_NRN;A;GEO |
Significance: 7.86268e-11 |
Significance: 0.00020451 |
| iPV_NRN;A;GEO |
Significance: 1.98011e-11 |
Significance: 1.76896e-10 |
| eCortical_NRN;A;GEO |
Significance: 1.76807e-10 |
Significance: 5.02026e-10 |
| Muscle;A;CL |
Significance: 3.66498e-09 |
Significance: 0.00013816700000000002 |
| Heart;D;En |
Significance: 2.1848e-10 |
Significance: 3.951319999999999e-10 |
| BRN;OLFTRY_BLB;A;CL |
Significance: 2.1535599999999997e-08 |
Significance: 0.000139679 |
| BRN;FRNTL_CRTX;A;CL |
Significance: 4.3860000000000004e-11 |
Significance: 6.39782e-11 |
| BRN;PTMN;A;CL |
Significance: 1.1586e-09 |
Significance: 3.5615e-09 |
| BRN;SNSR_MTR_CRTX;A;CL |
Significance: 5.45073e-10 |
Significance: 6.144840000000001e-10 |
| WHL_BRN;8wks;D;GEO |
Significance: 3.2024999999999995e-10 |
Significance: 1.05526e-08 |
| FBRBLST;8wks;D;En |
Significance: 4.5493899999999994e-07 |
Significance: 0.000519307 |
| LNG;P0;D;En |
Significance: 1.68364e-07 |
Significance: 0.00047524599999999997 |
| Heart;8wks;D;En |
Significance: 7.15622e-08 |
Significance: 2.00613e-06 |
| Heart;P0;D;En |
Significance: 1.11791e-09 |
Significance: 2.45292e-07 |
| CRBLM;D;En |
Significance: 2.82811e-07 |
Significance: 1.71804e-05 |
| WHL_BRN;8wks;D;En |
Significance: 1.2922500000000002e-09 |
Significance: 1.47924e-09 |
| wES;Telenchephalon;D;En |
Significance: 2.40616e-10 |
Significance: 1.0055800000000002e-09 |
Unique Cell types only TF-MoDISco finds Mef2c: #112
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 2.6726400000000003e-07 | Absent |
| NK_SPLND;A;CL |
Significance: 1.39924e-08 | Absent |
| preB;A;CL |
Significance: 2.7084899999999997e-06 | Absent |
| immatureB;A;CL |
Significance: 0.000137265 | Absent |
| matureB;A;CL |
Significance: 1.0821199999999999e-07 | Absent |
| GC_B;A;CL |
Significance: 4.78415e-11 | Absent |
| aB_LPS;A;CL |
Significance: 2.64104e-08 | Absent |
| aB_LPS+IL4;A;CL |
Significance: 2.96423e-09 | Absent |
| aB_LPS+IL21;A;CL |
Significance: 1.27934e-07 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.000117415 | Absent |
| aB_CD40+IL4;A;CL |
Significance: 6.53543e-09 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 1.76475e-06 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 4.78629e-05 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 4.0865699999999996e-06 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 9.389569999999999e-08 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 1.65994e-08 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 2.5819599999999996e-09 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 9.075600000000001e-05 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 5.02156e-05 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 5.89954e-07 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 1.2228299999999998e-08 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 3.49662e-06 | Absent |
| DC_BMD;A;CL |
Significance: 3.49258e-08 | Absent |
| DP;A;CL |
Significance: 6.51427e-05 | Absent |
| ISP;A;CL |
Significance: 1.42964e-07 | Absent |
| ES;MEF;A;CL |
Significance: 1.7736799999999998e-08 | Absent |
| Adrenal;A;CL |
Significance: 4.6192800000000005e-08 | Absent |
| placenta;A;CL |
Significance: 2.4e-07 | Absent |
| STMCH;A;CL |
Significance: 0.0172548 | Absent |
| eye-NRL_RTN;A;CL |
Significance: 4.42977e-05 | Absent |
| NRV;Eye-OPTC;A;CL |
Significance: 1.57275e-05 | Absent |
| BRN;MDL_OBLNGT;A;CL |
Significance: 0.00017687 | Absent |
| BRN;CRBLM;A;CL |
Significance: 1.43277e-05 | Absent |
| restingB;A;CL |
Significance: 5.0756400000000005e-09 | Absent |
| aB;CD180;A;CL |
Significance: 6.10687e-08 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 5.3952e-07 | Absent |
| gamma_delta_TCR_MCR;A;CL |
Significance: 2.0650300000000003e-09 | Absent |
| gamma_delta_TCR_M-S-;A;CL |
Significance: 2.5727199999999997e-05 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 1.13942e-11 | Absent |
| ILC1;A;CL |
Significance: 2.11905e-07 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 2.37922e-06 | Absent |
| ILC2;A;CL |
Significance: 1.7675e-06 | Absent |
| aB_LPS+IL4_24h;A;CL |
Significance: 2.42707e-06 | Absent |
| aB_LPS+IL4+Oligomycin_24h;A;CL |
Significance: 2.75964e-06 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 3.1312299999999997e-09 | Absent |
| wCH12;A;CL |
Significance: 9.98719e-05 | Absent |
| CH12;med14;A;CL |
Significance: 7.381770000000001e-09 | Absent |
| wCH12_drug;A;CL |
Significance: 1.92664e-07 | Absent |
| CLP;A;CL |
Significance: 1.3721e-07 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 4.02276e-07 | Absent |
| RTN;A;GEO |
Significance: 4.550680000000001e-06 | Absent |
| CRBL_GRNL_Precrsr;A;GEO |
Significance: 0.0172337 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 6.7792e-07 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 1.29528e-08 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 3.46436e-06 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 7.77697e-08 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 1.3744700000000001e-09 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 4.9670600000000005e-05 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 4.2248e-08 | Absent |
| iNKT;A;GEO |
Significance: 1.4699000000000002e-07 | Absent |
| aB;A;GEO |
Significance: 1.8743799999999999e-06 | Absent |
| prePLSM_B;A;GEO |
Significance: 1.21575e-07 | Absent |
| preB_BMD;A;GEO |
Significance: 5.0907e-08 | Absent |
| B;B220_CD43;A;GEO |
Significance: 8.54587e-09 | Absent |
| DC_LPS;6h;A;GEO |
Significance: 9.41794e-07 | Absent |
| DC_pBMD;A;GEO |
Significance: 1.9659499999999998e-06 | Absent |
| ROD_PHT_RCPTR;A;GEO |
Significance: 2.0526299999999998e-08 | Absent |
| GCN_PHT_RCPTR;A;GEO |
Significance: 1.06549e-06 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 1.11502e-06 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 1.16087e-06 | Absent |
| SKN_EPTHL;A;GEO |
Significance: 1.50753e-06 | Absent |
| NPC;F129;A;GEO |
Significance: 4.06156e-09 | Absent |
| NPC;G4;A;GEO |
Significance: 4.4713300000000006e-10 | Absent |
| NPC;Ch13;A;GEO |
Significance: 3.99237e-08 | Absent |
| NPC;mE6;A;GEO |
Significance: 3.50168e-07 | Absent |
| iVIP_NRN;A;GEO |
Significance: 1.92597e-10 | Absent |
| Corticotrope;A;GEO |
Significance: 8.858239999999999e-06 | Absent |
| Melanotrope;A;GEO |
Significance: 2.14167e-07 | Absent |
| MegP;A;En |
Significance: 1.23384e-06 | Absent |
| pCMP;A;CL |
Significance: 1.7410900000000004e-08 | Absent |
| DC_LPS;4h;A;En |
Significance: 2.8641599999999998e-06 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 5.732090000000001e-10 | Absent |
| LNG;8wks;D;GEO |
Significance: 3.5690600000000003e-07 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.0469786 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 2.6429099999999997e-08 | Absent |
| NIH3T3_FBROBLST;D;En |
Significance: 4.80343e-07 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 4.75784e-08 | Absent |
| KDNY;P0;D;En |
Significance: 2.31207e-07 | Absent |
| KDNY;8wks;D;En |
Significance: 3.3382199999999996e-07 | Absent |
| LNG;8wks;D;En |
Significance: 3.7380699999999995e-10 | Absent |
| wES;LNG;E14.5;D;En |
Significance: 6.73467e-08 | Absent |
| Adipocyte_3T3-L1D;C57BL6;D8;D;En |
Significance: 2.52335e-07 | Absent |
| RTN;D1;D;En |
Significance: 0.000138157 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 2.04205e-08 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 6.78141e-10 | Absent |
| Muller;P12;D;En |
Significance: 2.10969e-05 | Absent |
| wES.Fr_BRN;E14.4;D;En |
Significance: 5.79269e-06 | Absent |
| Fr_BRN;P0;D;En |
Significance: 1.14459e-06 | Absent |
| Hnd_BRN;P0;D;En |
Significance: 2.18336e-08 | Absent |
| wES;Hnd_BRN;E14.5;D;En |
Significance: 0.000784636 | Absent |
| Md_BRN;D;En |
Significance: 1.25795e-07 | Absent |
| wES;limb;E14.5;D;En |
Significance: 1.54505e-05 | Absent |
| wES;FaceP;E14.5;D;En |
Significance: 4.72838e-07 | Absent |
| STMCH;P0;D;En |
Significance: 1.0606500000000001e-05 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 1.14738e-06 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 3.78822e-05 | Absent |
| AML;D;En |
Significance: 2.3518699999999997e-09 | Absent |
| CH12.LX;D;En |
Significance: 7.763389999999999e-08 | Absent |
| NIH3T3;D;En |
Significance: 7.31796e-08 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 1.06972e-06 | Absent |
| MN1;D;En |
Significance: 5.0195e-07 | Absent |
| 3T3-L1;D;En |
Significance: 8.87727e-07 | Absent |
