In [1]:
# Parameters
data_name = "Tal1"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
In [2]:
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types

load data from labcluster

Using TensorFlow backend.
2019-08-23 11:41:08,818 [WARNING] git-lfs not installed
In [3]:
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root, 
                                                              overwrite=False)

TF-MoDISco is using the TensorFlow backend.
In [4]:
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Tal1: Motif: M09472_2.00



Forward PWM

Reverse PWM

Shared Cell types both TF-MoDISco and Homer finds Tal1: #44

Cell typeModiscoHomer
wES;limb;E14.5;D;En

Pattern: metacluster_1/pattern_1

Significance: 0.0287106

Pattern: motif5.motif

Significance: 0.0305221

wES;limb;E11.5;D;En

Pattern: metacluster_0/pattern_6

Significance: 0.00313353

Pattern: motif12.motif

Significance: 0.049164099999999995

wES;FaceP;E14.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.000712925

Pattern: motif5.motif

Significance: 0.00021883599999999998

proB;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.042013199999999994

/

Pattern: metacluster_1/pattern_11

Significance: 1.05185e-05

Pattern: motif15.motif

Significance: 0.014329699999999999

preB;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.046961300000000004

Pattern: motif12.motif

Significance: 0.0138835

wES;FaceP;E11.5;D;En

Pattern: metacluster_1/pattern_2

Significance: 0.052241499999999996

Pattern: motif7.motif

Significance: 0.0531342

wES;NRL_Tube;E11.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 2.46064e-05

Pattern: motif15.motif

Significance: 0.0231393

SKLTL_Muscle;8wks;D;En

Pattern: metacluster_1/pattern_12

Significance: 0.00041952300000000004

Pattern: motif10.motif

Significance: 0.0204815

plasmaB;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.034507800000000005

Pattern: motif9.motif

Significance: 0.0514538

preB_BMD;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0312089

Pattern: motif9.motif

Significance: 0.00037039999999999995

B;B220_CD43;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.0432193

/

Pattern: metacluster_1/pattern_18

Significance: 0.020916

/

Pattern: metacluster_1/pattern_24

Significance: 0.000482711

Pattern: motif11.motif

Significance: 0.0172548

416B;HMTP_SPNSN;CD34+;D;En

Pattern: metacluster_1/pattern_11

Significance: 9.54711e-07

Pattern: motif11.motif

Significance: 0.0130148

Erythroid;Ter119+;A;GEO

Pattern: metacluster_0/pattern_7

Significance: 9.56579e-06

Pattern: motif8.motif

Significance: 0.00222757

AML;AE9a;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 3.56369e-05

Pattern: motif3.motif

Significance: 0.000506947

Mast;A;CL

Pattern: metacluster_0/pattern_7

Significance: 2.77427e-05

Pattern: motif6.motif

Significance: 0.00193737

BSPHL;A;CL

Pattern: metacluster_1/pattern_8

Significance: 7.65437e-05

Pattern: motif7.motif

Significance: 9.88542e-05

MEF.GATA-1-ER;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.00798296

Pattern: motif4.motif

Significance: 0.00790946

MEL;D;En

Pattern: metacluster_1/pattern_7

Significance: 0.0468483

Pattern: motif4.motif

Significance: 0.0219393

MEL_Znc_di-cl;24h;D;En

Pattern: metacluster_1/pattern_26

Significance: 0.0383548

Pattern: motif6.motif

Significance: 0.019408900000000003

NPC;F129;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0104842

Pattern: motif10.motif

Significance: 0.0158857

NPC;G4;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.00362525

Pattern: motif9.motif

Significance: 0.00264118

NPC;Ch13;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.00630504

Pattern: motif13.motif

Significance: 0.00603051

NPC;mE6;A;GEO

Pattern: metacluster_1/pattern_7

Significance: 0.00265161

Pattern: motif11.motif

Significance: 0.0115942

eCortical_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.0272899

Pattern: motif4.motif

Significance: 0.038845

Heart;D;En

Pattern: metacluster_0/pattern_8

Significance: 0.00723974

/

Pattern: metacluster_0/pattern_17

Significance: 6.591519999999999e-06

Pattern: motif13.motif

Significance: 0.05246519999999999

MegEP;A;CL

Pattern: metacluster_1/pattern_2

Significance: 0.00107627

Pattern: motif2.motif

Significance: 1.5261e-05

MegP;A;En

Pattern: metacluster_1/pattern_6

Significance: 0.000102474

Pattern: motif7.motif

Significance: 0.0199889

pCMP;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.000264742

Pattern: motif7.motif

Significance: 0.02815

BRN;SNSR_MTR_CRTX;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.0199766

Pattern: motif7.motif

Significance: 0.049458499999999996

416B_MP;CD34+;D;GEO

Pattern: metacluster_1/pattern_12

Significance: 5.7826000000000005e-05

Pattern: motif12.motif

Significance: 0.0221093

WHL_BRN;8wks;D;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.0588839

/

Pattern: metacluster_1/pattern_10

Significance: 0.002963

Pattern: motif2.motif

Significance: 0.0341847

KDNY;P0;D;En

Pattern: metacluster_1/pattern_9

Significance: 0.0156661

Pattern: motif15.motif

Significance: 0.0192062

wES;LVR;E11.5;D.;En

Pattern: metacluster_1/pattern_5

Significance: 0.00364532

/

Pattern: metacluster_1/pattern_20

Significance: 0.0442948

Pattern: motif3.motif

Significance: 0.00480905

LVR;P0;D;En

Pattern: metacluster_1/pattern_7

Significance: 2.8763000000000002e-05

Pattern: motif13.motif

Significance: 0.00254251

LNG;P0;D;En

Pattern: metacluster_1/pattern_11

Significance: 0.00368821

Pattern: motif18.motif

Significance: 0.00745796

wES;LNG;E14.5;D;En

Pattern: metacluster_1/pattern_6

Significance: 0.00410127

Pattern: motif13.motif

Significance: 0.00637516

Heart;P0;D;En

Pattern: metacluster_1/pattern_13

Significance: 1.09535e-06

Pattern: motif13.motif

Significance: 0.00299628

CRBL_GRNL_Precrsr;A;GEO

Pattern: metacluster_0/pattern_0

Significance: 0.00381257

Pattern: motif2.motif

Significance: 0.00169706

RTN;D1;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.000301809

Pattern: motif16.motif

Significance: 0.00895866

EP;c-kit+CD71+Ter119+;D;En

Pattern: metacluster_1/pattern_8

Significance: 0.00770678

Pattern: motif5.motif

Significance: 0.028346899999999998

416B_MP;CD34+;D;En

Pattern: metacluster_1/pattern_13

Significance: 0.00413656

Pattern: motif9.motif

Significance: 0.0548896

wES;MSDRM;E11.5;D;En

Pattern: metacluster_0/pattern_1

Significance: 0.00149418

Pattern: motif4.motif

Significance: 0.004266

wES.Fr_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.012859

Pattern: motif11.motif

Significance: 0.035080599999999997

wES;Md_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00705819

Pattern: motif19.motif

Significance: 0.0423028

Unique Cell types only TF-MoDISco finds Tal1: #78

Cell typeModiscoHomer
wES;Fr_lmb;E11.5;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0131812

Absent
iNKT;A;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.0395319

Absent
STMCH;P0;D;En

Pattern: metacluster_1/pattern_17

Significance: 0.000192067

Absent
B1_B;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.047368

Absent
prePLSM_B;A;GEO

Pattern: metacluster_1/pattern_20

Significance: 0.00313137

/

Pattern: metacluster_1/pattern_21

Significance: 0.0486781

Absent
ESNPHL_ex-vivo_BlbC;A;CL

Pattern: metacluster_0/pattern_18

Significance: 0.00947571

Absent
ESNPHL_SPLND_BlbCA;CL

Pattern: metacluster_0/pattern_15

Significance: 1.3955599999999999e-05

Absent
ENDRM_ESD;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 1.59382e-07

Absent
Tfh_LCMV;A;CL

Pattern: metacluster_1/pattern_1

Significance: 0.023814500000000002

Absent
GCN_PHT_RCPTR;A;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.0506879

Absent
MTR_NRN_MN1;methyl3;D;En

Pattern: metacluster_0/pattern_14

Significance: 0.00317464

Absent
MN1;D;En

Pattern: metacluster_1/pattern_20

Significance: 0.016377000000000003

Absent
wES;3rd_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.027410200000000003

/

Pattern: metacluster_0/pattern_22

Significance: 0.040749

Absent
npES;5th_Rhmbmr_delC;E8.5;A;GEO

Pattern: metacluster_1/pattern_21

Significance: 0.0119412

Absent
wES;5th_Rhmbmr;E9.5;A;GEO

Pattern: metacluster_0/pattern_15

Significance: 0.000161954

Absent
largeDPprecrsr;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.0212349

Absent
smallDPprecrsor;CD4+CD8+CD69-;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.029954400000000003

Absent
CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.0207879

Absent
wES;5th_Rhmbmr;E8.5;A;GEO

Pattern: metacluster_0/pattern_12

Significance: 0.039423

/

Pattern: metacluster_0/pattern_22

Significance: 0.0257943

/

Pattern: metacluster_0/pattern_26

Significance: 4.91828e-06

Absent
npES;5th_Rhmbmr_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_5

Significance: 0.042304900000000006

Absent
wES;posterior;1;E9.5;A;GEO

Pattern: metacluster_1/pattern_5

Significance: 0.0350201

Absent
wES;posterior;2;E9.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 5.6531400000000006e-05

Absent
wES;posterior;1;E8.5;A;GEO

Pattern: metacluster_0/pattern_10

Significance: 0.0281184

Absent
npES;posterior_delA;E8.5;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.000335196

/

Pattern: metacluster_0/pattern_18

Significance: 5.85746e-07

Absent
npES;posterior_delC;E8.5;A;GEO

Pattern: metacluster_0/pattern_9

Significance: 0.0247222

Absent
SKN_EPTHL;A;GEO

Pattern: metacluster_0/pattern_6

Significance: 0.00022837400000000002

Absent
Erythroblast;A;CL

Pattern: metacluster_1/pattern_9

Significance: 4.96281e-07

Absent
DP;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0340695

Absent
ePyramidal_NRN;A;GEO

Pattern: metacluster_1/pattern_2

Significance: 0.023866099999999998

Absent
DP3b;A;CL

Pattern: metacluster_1/pattern_3

Significance: 0.029555099999999997

Absent
ISP;A;CL

Pattern: metacluster_1/pattern_4

Significance: 0.00366979

Absent
iPV_NRN;A;GEO

Pattern: metacluster_1/pattern_3

Significance: 0.0225557

Absent
iVIP_NRN;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.0192233

Absent
SML_INTSTN;A;CL

Pattern: metacluster_0/pattern_16

Significance: 2.1020500000000003e-05

Absent
LRG_INTSTN;A;CL

Pattern: metacluster_0/pattern_12

Significance: 3.57268e-05

Absent
LNG;A;CL

Pattern: metacluster_1/pattern_20

Significance: 0.000704031

Absent
Muscle;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.00190421

Absent
G_NRN_P;A;GEO

Pattern: metacluster_1/pattern_0

Significance: 0.00697041

/

Pattern: metacluster_1/pattern_12

Significance: 0.041349199999999996

Absent
Corticotrope;A;GEO

Pattern: metacluster_0/pattern_17

Significance: 0.000523529

Absent
Melanotrope;A;GEO

Pattern: metacluster_0/pattern_8

Significance: 0.00333721

Absent
placenta;A;CL

Pattern: metacluster_0/pattern_17

Significance: 0.00040326

Absent
EPP;A;En

Pattern: metacluster_1/pattern_9

Significance: 7.33143e-06

Absent
pErythroblast;A;En

Pattern: metacluster_1/pattern_9

Significance: 0.00010396799999999999

Absent
BRN;OLFTRY_BLB;A;CL

Pattern: metacluster_0/pattern_13

Significance: 0.0041635

Absent
BRN;FRNTL_CRTX;A;CL

Pattern: metacluster_1/pattern_12

Significance: 0.0255776

Absent
BRN;PTMN;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.023438499999999998

Absent
LVR;8wks;D;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.000303693

Absent
LNG_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.0035631

Absent
SHRT_TRM_HSC;A;CL

Pattern: metacluster_1/pattern_14

Significance: 6.84659e-05

Absent
LNG;8wks;D;GEO

Pattern: metacluster_0/pattern_22

Significance: 3.23279e-06

Absent
T_SPLND_blstCLTRD;CD4+;D;GEO

Pattern: metacluster_1/pattern_13

Significance: 0.00843738

Absent
apCD4Eff;D;GEO

Pattern: metacluster_1/pattern_16

Significance: 0.0132484

Absent
ILC2precrsr;A;CL

Pattern: metacluster_1/pattern_6

Significance: 0.00921178

Absent
NCR+ILC3;A;CL

Pattern: metacluster_1/pattern_18

Significance: 0.00871064

Absent
ILC2_Nippo;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.009428299999999999

Absent
NCR+ILC3+IL23;A;CL

Pattern: metacluster_1/pattern_16

Significance: 0.0007311389999999999

Absent
ILC2;A;CL

Pattern: metacluster_1/pattern_5

Significance: 0.00048817699999999996

Absent
Th2_nippo;A;CL

Pattern: metacluster_1/pattern_10

Significance: 0.00081818

Absent
wES;WHL_BRN;E14.5;D;GEO

Pattern: metacluster_0/pattern_2

Significance: 0.00703216

Absent
wCH12_drug;A;CL

Pattern: metacluster_1/pattern_17

Significance: 0.00498526

Absent
LNG;8wks;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.00344459

/

Pattern: metacluster_0/pattern_22

Significance: 3.13673e-07

Absent
Heart;8wks;D;En

Pattern: metacluster_0/pattern_11

Significance: 0.020577599999999998

/

Pattern: metacluster_0/pattern_18

Significance: 1.6909e-06

Absent
Adipose;D;En

Pattern: metacluster_0/pattern_17

Significance: 0.034251

Absent
ILC2+IL33+IL25;A;GEO

Pattern: metacluster_1/pattern_9

Significance: 0.000725913

Absent
wES;RTN;E11.5;D;En

Pattern: metacluster_0/pattern_3

Significance: 0.00064887

/

Pattern: metacluster_0/pattern_20

Significance: 0.051519100000000005

Absent
ILC2;A;GEO

Pattern: metacluster_1/pattern_10

Significance: 0.0361198

Absent
ILC3;A;GEO

Pattern: metacluster_1/pattern_19

Significance: 0.00081203

Absent
abTreg;CD4+_CD25+;8wks;D;En

Pattern: metacluster_1/pattern_16

Significance: 0.047913300000000006

Absent
ILC2_AbxGRMFree;A;GEO

Pattern: metacluster_1/pattern_1

Significance: 0.041632

/

Pattern: metacluster_1/pattern_14

Significance: 0.000787269

Absent
Fr_BRN;P0;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.049286800000000006

/

Pattern: metacluster_1/pattern_15

Significance: 0.003478

Absent
Hnd_BRN;P0;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.00245735

Absent
wES;Hnd_BRN;E11.5;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.021586900000000003

Absent
wES;Hnd_BRN;E14.5;D;En

Pattern: metacluster_0/pattern_7

Significance: 0.00271038

Absent
wES;Md_BRN;E14.4;D;En

Pattern: metacluster_0/pattern_4

Significance: 0.00548342

Absent
Md_BRN;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.0103343

Absent
wES;WHL_BRN;E14.5;D;En

Pattern: metacluster_1/pattern_5

Significance: 0.00432985

/

Pattern: metacluster_1/pattern_6

Significance: 0.0279362

Absent
WHL_BRN;8wks;D;En

Pattern: metacluster_1/pattern_4

Significance: 0.0304343

/

Pattern: metacluster_1/pattern_11

Significance: 0.0197673

Absent
wES;Telenchephalon;D;En

Pattern: metacluster_1/pattern_3

Significance: 0.0230834

Absent
Unique Cell types only Homer finds Tal1: #1

Cell typeModiscoHomer
DP3a;A;CLAbsent

Pattern: motif12.motif

Significance: 0.0190902