Homer de novo Motif Results (/srv/scratch/jisraeli/projects/jzeitlinger_collab/homer_analysis/cluster_0_homer/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 3768
Total background sequences = 7647
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 A C T G T C A G A C G T G A C T G T C A C G T A C G A T A G T C A C G T A G T C A C G T A C T G 1e-45-1.041e+020.85%0.03%85.7bp (0.0bp)Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer(0.692)
More Information | Similar Motifs Found		motif file (matrix)
2 A C G T A T C G A C G T C T G A A C T G T C G A A T G C A G T C A G C T G T C A C G T A A C T G 1e-35-8.240e+010.85%0.04%79.7bp (110.9bp)TRB2/MA1073.1/Jaspar(0.640)
More Information | Similar Motifs Found		motif file (matrix)
3 A C T G A T C G A C G T C G T A A C G T A G T C A G C T A C T G A T C G A C T G 1e-31-7.178e+010.64%0.03%79.2bp (47.6bp)PB0159.1_Rfx4_2/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
4 G C T A A G T C G T C A G T C A C G A T G A T C G T A C G A C T G T C A A C G T C G T A C A T G 1e-31-7.178e+010.64%0.03%94.2bp (17.9bp)PB0165.1_Sox11_2/Jaspar(0.574)
More Information | Similar Motifs Found		motif file (matrix)
5 C T A G T C A G G T A C G C T A T G C A G A T C G C A T C T G A T C A G T G C A C T G A C G A T 1e-29-6.873e+010.74%0.04%96.2bp (93.7bp)br-Z1/dmmpmm(Pollard)/fly(0.694)
More Information | Similar Motifs Found		motif file (matrix)
6 G T C A C G T A A C T G C T A G C G T A G T A C A T C G C G A T A G C T G T A C 1e-28-6.530e+011.38%0.17%67.9bp (85.9bp)ttk/dmmpmm(Pollard)/fly(0.702)
More Information | Similar Motifs Found		motif file (matrix)
7 C A T G A G T C C G A T A C T G G C A T G T C A C G A T C A T G C A T G A T G C G A T C G C T A 1e-27-6.408e+010.58%0.01%70.4bp (0.0bp)ENOX1(RRM)/Homo_sapiens-RNCMPT00149-PBM/HughesRNA(0.695)
More Information | Similar Motifs Found		motif file (matrix)
8 A C G T A T G C A G T C C G T A A C T G C G T A A C T G T A C G C G T A A C G T A T C G C G T A 1e-27-6.408e+010.58%0.02%89.1bp (72.6bp)G3BP2(RRM)/Homo_sapiens-RNCMPT00021-PBM/HughesRNA(0.697)
More Information | Similar Motifs Found		motif file (matrix)
9 G C A T T G A C G C T A G A T C G A C T G C T A G C T A T C G A G A C T C A T G C G A T C G T A 1e-27-6.382e+010.80%0.04%75.3bp (15.9bp)PB0028.1_Hbp1_1/Jaspar(0.644)
More Information | Similar Motifs Found		motif file (matrix)
10 T C A G A T C G C T G A G T A C G A T C C G T A A G T C G T A C G T C A T G A C G T C A A G T C 1e-27-6.366e+011.86%0.36%94.3bp (100.6bp)MET31(MacIsaac)/Yeast(0.752)
More Information | Similar Motifs Found		motif file (matrix)
11 G T A C C G T A C G T A C T G A C G A T C G T A C G T A C A T G C G A T A C G T C A T G C G T A 1e-24-5.708e+011.28%0.19%98.0bp (97.9bp)HuR(RRM)/Homo_sapiens-RNCMPT00032-PBM/HughesRNA(0.696)
More Information | Similar Motifs Found		motif file (matrix)
12 A C T G C G A T A T C G A G T C A G C T A G T C G C A T T C G A A T C G C G A T A G T C G A C T 1e-24-5.563e+010.64%0.04%87.1bp (103.2bp)kni/dmmpmm(Noyes)/fly(0.731)
More Information | Similar Motifs Found		motif file (matrix)
13 C T A G C G T A A G C T A G T C A C G T A G T C C G A T C T G A A G T C A C G T T C G A C G T A 1e-24-5.563e+010.64%0.03%89.3bp (52.7bp)At3g60580(C2H2)/col-At3g60580-DAP-Seq(GSE60143)/Homer(0.639)
More Information | Similar Motifs Found		motif file (matrix)
14 C G A T C A G T C A T G G A T C A G C T G C A T G A T C G C A T C T G A C G T A C G A T G C T A 1e-23-5.309e+011.22%0.19%108.5bp (107.5bp)AT5G60130(ABI3VP1)/col-AT5G60130-DAP-Seq(GSE60143)/Homer(0.720)
More Information | Similar Motifs Found		motif file (matrix)
15 A G T C C G T A A C G T G T A C A G T C C G T A A C G T G T A C A T G C C G T A 1e-21-5.029e+010.74%0.06%111.5bp (90.6bp)RAP1/MA0359.1/Jaspar(0.802)
More Information | Similar Motifs Found		motif file (matrix)
16 T G A C C G T A A G T C A C T G C T A G A C G T C A T G A G T C A C G T C A T G 1e-21-4.918e+010.85%0.09%103.3bp (70.1bp)ABI4(2)(AP2/EREBP)/Zea mays/AthaMap(0.767)
More Information | Similar Motifs Found		motif file (matrix)
17 A C T G G T A C A G C T T C A G G T C A A C G T T C G A T C A G A T C G A G C T A G T C G C A T 1e-20-4.638e+010.64%0.05%106.6bp (93.7bp)FZF1/MA0298.1/Jaspar(0.720)
More Information | Similar Motifs Found		motif file (matrix)
18 A C G T C G A T A G T C C G T A A C G T A G T C A C T G A G T C 1e-19-4.605e+013.51%1.40%98.9bp (95.2bp)CHA4(MacIsaac)/Yeast(0.832)
More Information | Similar Motifs Found		motif file (matrix)
19 C G T A A G T C C G T A A C T G A G T C A C G T A C G T A C G T A C G T A G T C 1e-19-4.473e+010.85%0.10%107.8bp (69.7bp)MSC/MA0665.1/Jaspar(0.765)
More Information | Similar Motifs Found		motif file (matrix)
20 G C A T A C G T A G T C C G A T G A T C A C G T C G T A C A T G A G T C A G C T C T G A A C T G 1e-19-4.473e+010.85%0.10%104.1bp (76.7bp)SRSF10(RRM)/Homo_sapiens-RNCMPT00089-PBM/HughesRNA(0.690)
More Information | Similar Motifs Found		motif file (matrix)
21 A G T C A T C G C T G A A G C T G A C T A G T C A C G T A C G T A C T G A G T C 1e-18-4.318e+010.53%0.04%89.8bp (129.5bp)SD0002.1_at_AC_acceptor/Jaspar(0.674)
More Information | Similar Motifs Found		motif file (matrix)
22 T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G 1e-17-3.923e+0136.29%29.83%91.5bp (92.8bp)ANKHD1(KH)/Homo_sapiens-RNCMPT00002-PBM/HughesRNA(0.681)
More Information | Similar Motifs Found		motif file (matrix)
23 A C G T A G T C A C G T T A G C A G T C A C T G C G T A A C T G A C T G G T A C 1e-17-3.917e+011.06%0.19%77.9bp (77.8bp)YNR063W/MA0432.1/Jaspar(0.785)
More Information | Similar Motifs Found		motif file (matrix)
24 G T A C A G T C A C G T G T C A A C T G C G T A G T C A A G T C 1e-16-3.908e+016.38%3.54%101.6bp (95.7bp)ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer(0.845)
More Information | Similar Motifs Found		motif file (matrix)
25 G T A C G C A T T C A G A T G C C G T A A T C G A T G C G C T A T C A G T G A C C G T A T C A G 1e-16-3.755e+0139.48%33.01%92.7bp (94.4bp)SeqBias: GCW-triplet(0.718)
More Information | Similar Motifs Found		motif file (matrix)
26 A C G T C G T A A G T C C G T A A C T G C G T A A C T G A G T C A C G T A G T C 1e-16-3.724e+010.48%0.04%113.3bp (5.4bp)PB0099.1_Zfp691_1/Jaspar(0.727)
More Information | Similar Motifs Found		motif file (matrix)
27 C G T A A G T C A C T G C G T A A C T G A G T C A G T C A C T G C G T A A G T C 1e-16-3.724e+010.48%0.03%82.4bp (63.0bp)CBF4(AP2EREBP)/colamp-CBF4-DAP-Seq(GSE60143)/Homer(0.708)
More Information | Similar Motifs Found		motif file (matrix)
28 T G C A G C A T G C T A C G A T T G C A G A C T C G T A G C A T G C T A C A G T T G A C G C A T 1e-15-3.681e+010.80%0.12%62.9bp (159.7bp)PB0080.1_Tbp_1/Jaspar(0.791)
More Information | Similar Motifs Found		motif file (matrix)
29 C G T A G C A T A G T C A C T G C G T A A C G T A G T C A C T G 1e-15-3.528e+010.37%0.02%82.6bp (3.2bp)HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer(0.816)
More Information | Similar Motifs Found		motif file (matrix)
30 C G T A A G T C A C T G A C G T A G T C C G T A A C G T C G T A 1e-15-3.528e+010.37%0.02%112.3bp (131.0bp)Crem/MA0609.1/Jaspar(0.902)
More Information | Similar Motifs Found		motif file (matrix)
31 A G T C A C T G A C G T G T A C A C T G A G T C C G T A A G T C 1e-15-3.502e+010.58%0.07%76.3bp (96.4bp)RSF1(RRM)/Drosophila_melanogaster-RNCMPT00061-PBM/HughesRNA(0.834)
More Information | Similar Motifs Found		motif file (matrix)
32 C G T A C G T A A G T C C G T A A C G T A G C T A G T C A C T G 1e-15-3.480e+011.06%0.22%96.8bp (106.0bp)TEC1(MacIsaac)/Yeast(0.748)
More Information | Similar Motifs Found		motif file (matrix)
33 A G T C A C G T A C T G A C G T A G T C A C T G A C G T A G T C 1e-13-3.198e+0188.63%84.27%94.9bp (95.6bp)RBM45(RRM)/Homo_sapiens-RNCMPT00241-PBM/HughesRNA(0.887)
More Information | Similar Motifs Found		motif file (matrix)
34 A C T G A G T C C G T A C G T A C G T A A C T G A G T C A G T C A G T C A C T G C G T A C G T A 1e-13-3.152e+010.43%0.04%67.1bp (60.1bp)Dof2/MA0020.1/Jaspar(0.638)
More Information | Similar Motifs Found		motif file (matrix)
35 A C T G A C T G A G T C A C G T A C G T A G T C A G T C A C G T A C G T C G T A A C G T C G T A 1e-13-3.118e+010.64%0.08%103.8bp (84.8bp)GCR1(MacIsaac)/Yeast(0.746)
More Information | Similar Motifs Found		motif file (matrix)
36 A G T C A G T C G A T C A T G C A T G C A G T C A T G C A T G C G T A C A G T C A G T C G T A C 1e-13-3.040e+0126.25%21.17%113.2bp (108.7bp)SeqBias: polyC-repeat(0.933)
More Information | Similar Motifs Found		motif file (matrix)
37 A C G T A G C T A C T G C G T A A C T G G T C A C G T A A C T G A C G T C G T A 1e-13-3.027e+010.53%0.05%81.5bp (52.5bp)At2g41835(C2H2)/col-At2g41835-DAP-Seq(GSE60143)/Homer(0.660)
More Information | Similar Motifs Found		motif file (matrix)
38 A C G T C G T A C G T A A C T G A C G T A C G T A G T C A G T C A T G C A C G T 1e-13-3.027e+010.53%0.05%96.0bp (103.4bp)EXC-7(RRM)/Caenorhabditis_elegans-RNCMPT00014-PBM/HughesRNA(0.725)
More Information | Similar Motifs Found		motif file (matrix)
39 A T C G C A G T C A T G A G C T C A T G A G C T C A T G A G C T T C G A A C G T C A T G A G C T 1e-12-2.955e+0119.87%15.42%110.7bp (106.5bp)SeqBias: CA-repeat(0.855)
More Information | Similar Motifs Found		motif file (matrix)
40 C G T A A G T C A C T G A C G T C T A G C G T A A C T G A G T C 1e-12-2.882e+011.33%0.40%102.3bp (103.6bp)TYE7/MA0409.1/Jaspar(0.759)
More Information | Similar Motifs Found		motif file (matrix)
41 * T A C G C T G A C T A G C T A G C A T G C G T A T C A G C G T A T C A G G C T A 1e-11-2.736e+0153.83%48.11%101.6bp (102.4bp)SeqBias: GA-repeat(0.846)
More Information | Similar Motifs Found		motif file (matrix)
42 * A C G T A C G T A G T C A G T C C G T A G T A C A C G T A C T G A G T C A G T C 1e-11-2.628e+010.53%0.07%90.5bp (54.6bp)MOD(RRM)/Drosophila_melanogaster-RNCMPT00140-PBM/HughesRNA(0.796)
More Information | Similar Motifs Found		motif file (matrix)
43 * A C G T A T G C G T A C A G T C A C G T C G T A A G T C A C T G 1e-11-2.627e+011.22%0.37%102.2bp (96.7bp)HNRNPA2B1(RRM)/Homo_sapiens-RNCMPT00024-PBM/HughesRNA(0.797)
More Information | Similar Motifs Found		motif file (matrix)
44 * A C G T A C G T A C T G C G T A A C G T A G T C A G T C A C G T A G T C C G T A 1e-11-2.604e+010.37%0.04%86.7bp (81.2bp)SRSF9(RRM)/Homo_sapiens-RNCMPT00074-PBM/HughesRNA(0.696)
More Information | Similar Motifs Found		motif file (matrix)
45 * A G T C A C G T A C T G A C G T A C G T C G T A A G T C G T C A A C T G A C T G 1e-11-2.550e+010.43%0.05%54.9bp (88.5bp)ovo/dmmpmm(Pollard)/fly(0.762)
More Information | Similar Motifs Found		motif file (matrix)
46 * G T C A A C G T A C G T A C T G A C T G A G T C A C T G A C G T 1e-10-2.337e+010.74%0.16%84.5bp (68.9bp)RIM101/MA0368.1/Jaspar(0.798)
More Information | Similar Motifs Found		motif file (matrix)
47 * C T G A C G T A A C G T C T A G A C G T A G T C A C T G A C T G 1e-10-2.337e+010.74%0.16%104.9bp (104.7bp)DRE1C/MA0985.1/Jaspar(0.924)
More Information | Similar Motifs Found		motif file (matrix)
48 * T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A 1e-10-2.333e+012.18%0.98%86.7bp (95.0bp)CHA4/MA0283.1/Jaspar(0.731)
More Information | Similar Motifs Found		motif file (matrix)
49 * C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T 1e-9-2.191e+0129.54%25.09%111.7bp (111.7bp)SeqBias: polyA-repeat(0.996)
More Information | Similar Motifs Found		motif file (matrix)
50 * A C T G A G T C A C T G A C G T A C T G C G T A A G T C C G T A 1e-8-1.956e+010.58%0.12%80.0bp (74.0bp)Pax2/MA0067.1/Jaspar(0.831)
More Information | Similar Motifs Found		motif file (matrix)