Information for 2-AGSCGTAG (Motif 22)

T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G
Reverse Opposite:
G T A C C G A T C G T A G T A C C T A G T A C G A G T C A G C T
p-value:1e-17
log p-value:-3.923e+01
Information Content per bp:1.720
Number of Target Sequences with motif1366.0
Percentage of Target Sequences with motif36.29%
Number of Background Sequences with motif2227.8
Percentage of Background Sequences with motif29.83%
Average Position of motif in Targets171.5 +/- 91.5bp
Average Position of motif in Background163.4 +/- 92.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

ANKHD1(KH)/Homo_sapiens-RNCMPT00002-PBM/HughesRNA

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGSCGTAG
AGACGTA-
 T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G
C G T A A C T G C G T A A G T C A C T G G C A T C G T A A C G T

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---AGSCGTAG----
CAAAGGCGTGGCCAG
 A C G T A C G T A C G T T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G A C G T A C G T A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

ERF115(AP2EREBP)/colamp-ERF115-DAP-Seq(GSE60143)/Homer

Match Rank:3
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AGSCGTAG-
VCGCCGYMAW
 A C G T T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G A C G T
T A G C T G A C A C T G A G T C A G T C C T A G G A T C G T C A C G T A G C A T

At5g08750(C3H)/col-At5g08750-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-AGSCGTAG---
YAGCCGCAAHWN
 A C G T T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G A C G T A C G T A C G T
G A C T T G C A C T A G G A T C A G T C C T A G A G T C G C T A C G T A G C T A G C T A G C A T

PB0117.1_Eomes_2/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGSCGTAG----
GCGGAGGTGTCGCCTC
 A C G T A C G T A C G T A C G T T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G A C G T A C G T A C G T A C G T
T A C G A T C G T C A G C T A G C T G A T A C G A T C G A G C T T C A G C G A T G A T C A C T G T A G C A G T C A G C T T A G C

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGSCGTAG
AGGCCTNG
 T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G
C T G A A C T G A C T G A G T C A G T C A G C T C T A G T A C G

PB0143.1_Klf7_2/Jaspar

Match Rank:7
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----AGSCGTAG----
NNNTNGGGCGTATNNTN
 A C G T A C G T A C G T A C G T A C G T T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G A C G T A C G T A C G T A C G T
G T C A C G T A A C T G G C A T C A G T C T A G A C T G A C T G G A T C C T A G A C G T G C T A G C A T T C A G G A T C A G C T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGSCGTAG
AGGCCTAG
 T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G
T G C A A C T G T A C G A T G C A G T C G A C T T C G A A T C G

At2g33710(AP2EREBP)/colamp-At2g33710-DAP-Seq(GSE60143)/Homer

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-AGSCGTAG-
YMGCCGCMAW
 A C G T T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G A C G T
A G T C T G A C A C T G A T G C G T A C C T A G G A T C G T A C C G T A G C A T

RBM28(RRM)/Homo_sapiens-RNCMPT00049-PBM/HughesRNA

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:AGSCGTAG-
--GAGTAGA
 T C G A A C T G A T G C A G T C A C T G C G A T G C T A C A T G A C G T
A C G T A C G T A C T G C G T A A C T G A C G T C G T A A C T G C G T A