Information for 24-TTTTTTTTTT (Motif 49)

C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
Reverse Opposite:
C T G A C T G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C A
p-value:1e-9
log p-value:-2.191e+01
Information Content per bp:1.919
Number of Target Sequences with motif1112.0
Percentage of Target Sequences with motif29.54%
Number of Background Sequences with motif1873.8
Percentage of Background Sequences with motif25.09%
Average Position of motif in Targets144.5 +/- 111.7bp
Average Position of motif in Background179.9 +/- 111.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: polyA-repeat

Match Rank:1
Score:1.00
Offset:0
Orientation:reverse strand
Alignment:TTTTTTTTTT
TTTTTTTTTT
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

VRN1(ABI3VP1)/col-VRN1-DAP-Seq(GSE60143)/Homer

Match Rank:2
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TTTTTTTTTT
TTTTTTTTTT
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0182.1_Srf_2/Jaspar

Match Rank:3
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---TTTTTTTTTT----
NNNNTTTTTTTTTNAAC
 A C G T A C G T A C G T C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T A C G T A C G T A C G T A C G T
C G A T C G T A T C G A A C G T C A G T C A G T C A G T C G A T A C G T A C G T A C G T G A C T G A C T G C A T G C T A T G C A A T G C

REM19(REM)/colamp-REM19-DAP-Seq(GSE60143)/Homer

Match Rank:4
Score:0.88
Offset:1
Orientation:reverse strand
Alignment:TTTTTTTTTT
-TTTTTTTT-
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T C G A T C G A T C G A T A C G T C G A T A C G T A C G T C A G T A C G T

SXL(RRM)/Drosophila_melanogaster-RNCMPT00119-PBM/HughesRNA

Match Rank:5
Score:0.86
Offset:1
Orientation:forward strand
Alignment:TTTTTTTTTT
-TTTTTTT--
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T G A C T G A C T C G A T C G A T C G A T C G A T C G A T A C G T A C G T

HuR(RRM)/Homo_sapiens-RNCMPT00274-PBM/HughesRNA

Match Rank:6
Score:0.85
Offset:1
Orientation:forward strand
Alignment:TTTTTTTTTT
-TTTTTTT--
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T A G C T A C G T C G A T C A G T A C G T A G C T A C G T A C G T A C G T

PABPC4(RRM)/Homo_sapiens-RNCMPT00043-PBM/HughesRNA

Match Rank:7
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:TTTTTTTTTT
-TTTTTTT--
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T A G C T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T

Pp_0228(RRM)/Physcomitrella_patens-RNCMPT00228-PBM/HughesRNA

Match Rank:8
Score:0.85
Offset:1
Orientation:forward strand
Alignment:TTTTTTTTTT
-TTTTTTT--
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T A G C T C G A T A C G T A C G T A C G T A C G T A G C T A C G T A C G T

Tv_0236(RRM)/Trichomonas_vaginalis-RNCMPT00236-PBM/HughesRNA

Match Rank:9
Score:0.84
Offset:1
Orientation:forward strand
Alignment:TTTTTTTTTT
-TTTTTTT--
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T A G C T C G A T A C G T A C G T A C G T A G C T A C G T A C G T A C G T

Ot_0262(RRM)/Ostreococcus_tauri-RNCMPT00262-PBM/HughesRNA

Match Rank:10
Score:0.84
Offset:1
Orientation:forward strand
Alignment:TTTTTTTTTT
-TTTTTTT--
 C A G T C G A T C G A T A C G T A C G T A C G T A C G T A C G T A G C T A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C G T A C G T