Information for 19-AAGACGGA (Motif 48)

T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A
Reverse Opposite:
A G C T A G T C A T G C A C T G A G C T G T A C A C G T A C G T
p-value:1e-10
log p-value:-2.333e+01
Information Content per bp:1.752
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif2.18%
Number of Background Sequences with motif73.5
Percentage of Background Sequences with motif0.98%
Average Position of motif in Targets180.5 +/- 86.7bp
Average Position of motif in Background152.5 +/- 95.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHA4/MA0283.1/Jaspar

Match Rank:1
Score:0.73
Offset:2
Orientation:forward strand
Alignment:AAGACGGA--
--GGCGGAGA
 T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A A C G T A C G T
A C G T A C G T C T A G A C T G A G T C A C T G A C T G C T G A C T A G C G T A

HAL9/MA0311.1/Jaspar

Match Rank:2
Score:0.72
Offset:4
Orientation:forward strand
Alignment:AAGACGGA-
----CGGAA
 T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A A C G T
A C G T A C G T A C G T A C G T A G T C A C T G A C T G C G T A C T G A

SIP4/MA0380.1/Jaspar

Match Rank:3
Score:0.70
Offset:2
Orientation:reverse strand
Alignment:AAGACGGA-
--TCCGGAG
 T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A A C G T
A C G T A C G T A G C T G A T C A G T C A C T G C T A G C T G A T C A G

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AAGACGGA
CCAGACAG-
 A C G T T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A
A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T

YKL222C/MA0428.1/Jaspar

Match Rank:5
Score:0.68
Offset:2
Orientation:forward strand
Alignment:AAGACGGA---
--AACGGAAAT
 T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A A C G T A C G T A C G T
A C G T A C G T G T C A T C G A A G T C A C T G A C T G C T G A C T G A C G T A A C G T

RGT1/Literature(Harbison)/Yeast

Match Rank:6
Score:0.68
Offset:4
Orientation:forward strand
Alignment:AAGACGGA---
----CGGANNA
 T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G T C A C T G A C T G C G T A A C G T A C G T C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-AAGACGGA-
CCAGACRSVB
 A C G T T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A A C G T
T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

CAT8/MA0280.1/Jaspar

Match Rank:8
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AAGACGGA-
---CCGGAA
 T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A A C G T
A C G T A C G T A C G T A G T C A G T C A C T G A C T G T C G A C T G A

ASG1/MA0275.1/Jaspar

Match Rank:9
Score:0.67
Offset:3
Orientation:forward strand
Alignment:AAGACGGA-
---CCGGAA
 T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A A C G T
A C G T A C G T A C G T A G T C A G T C A C T G A C T G T C G A C G T A

ANKHD1(KH)/Homo_sapiens-RNCMPT00002-PBM/HughesRNA

Match Rank:10
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AAGACGGA
-AGACGTA
 T G C A G T C A A C T G T C G A A G T C A T C G C T A G C T G A
A C G T C G T A A C T G C G T A A G T C A C T G G C A T C G T A