# Parameters
data_name = "Batf3"
task_idxs = "0-213,216-278"
homer_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_scans"
modisco_root = "/srv/scratch/msharmin/mouse_hem/with_tfd/full_mouse50/Naive_modisco2019"
overwrite = False
from matlas.reports import collect_motifDB_to_be_displayed, display_comparative_cell_types
homer_matches, modisco_matches = collect_motifDB_to_be_displayed(task_idxs, homer_root, modisco_root,
overwrite=False)
display_comparative_cell_types(data_name, homer_matches, modisco_matches)
Shared Cell types both TF-MoDISco and Homer finds Batf3: #3
| Cell type | Modisco | Homer |
|---|---|---|
| aB;A;GEO |
Significance: 0.0042005 |
Significance: 0.031011700000000003 |
| memT;CD4+;A;CL |
Significance: 0.00175196 |
Significance: 0.0174142 |
| T_MLD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00612312 |
Significance: 0.0480959 |
Unique Cell types only TF-MoDISco finds Batf3: #120
| Cell type | Modisco | Homer |
|---|---|---|
| MPP;A;CL |
Significance: 0.039004199999999996 | Absent |
| naiveCD8;A;CL |
Significance: 0.00905231 | Absent |
| Th17;CD4+;A;CL |
Significance: 0.0010854 | Absent |
| LRG_INTSTN;8wks;D;En |
Significance: 0.0160827 | Absent |
| MZ_B;A;CL |
Significance: 0.017969799999999998 | Absent |
| 3134_mammaryADNCRCNM;D;En |
Significance: 0.024149599999999997 | Absent |
| 416B;HMTP_SPNSN;CD34+;D;En |
Significance: 0.00443425 | Absent |
| aB_LSP+a_d_dextran;A;CL |
Significance: 0.0005101109999999999 | Absent |
| MEF.GATA-1-ER;D;En |
Significance: 0.0350946 | Absent |
| MEL_Znc_di-cl;24h;D;En |
Significance: 0.011320100000000001 | Absent |
| BSPHL;A;CL |
Significance: 0.0568178 | Absent |
| NIH3T3;D;En |
Significance: 0.0599128 | Absent |
| ESNPHL_SPLND_BlbCA;CL |
Significance: 0.0274159 | Absent |
| NTRPHL;A;CL |
Significance: 0.00656011 | Absent |
| Tfh_LCMV;A;CL |
Significance: 0.00111255 | Absent |
| Tfh;A;CL |
Significance: 0.00205562 | Absent |
| Tfh_mut;A;CL |
Significance: 0.0104521 | Absent |
| aNonTfh;A;CL |
Significance: 0.0101719 | Absent |
| aNonTfh_mut;A;CL |
Significance: 0.012117000000000001 | Absent |
| Tfr;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00265205 | Absent |
| Tfr_mut;CD4+CD44+CXCR5+PD1+CD25+;A;CL |
Significance: 0.00657024 | Absent |
| naiveT;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.039433800000000005 | Absent |
| naiveT_mut;CD4+_CD44-_CD62L-_CD25-;A;CL |
Significance: 0.022015 | Absent |
| smallDPprecrsor;CD4+CD8+CD69-;A;CL |
Significance: 0.00371769 | Absent |
| CD4+CD8intTCR+CD69+CD24+;B2defM;A;CL |
Significance: 0.00645676 | Absent |
| CD4+CD8-TCR+CD69+CD24+CD25-;B2defM;A;CL |
Significance: 0.00347282 | Absent |
| CD4+CD8-TCR+CD69-CD24-CD25-;B2defM;A;CL |
Significance: 0.0107084 | Absent |
| MTR_NRN_MN1;methyl3;D;En |
Significance: 0.0475859 | Absent |
| CD4+CD8+TCR+CD69+CD24+;MHC2defM;A;C |
Significance: 0.00279818 | Absent |
| CD4+CD8+TCR+CD69-CD24-;MHC2defM;A;CL |
Significance: 0.010358599999999999 | Absent |
| CD4+CD8-TCR+CD25+Foxp3-;A;CL |
Significance: 0.010251799999999998 | Absent |
| CD4+CD8-TCR+CD25-Foxp3+;A;CL |
Significance: 0.00468409 | Absent |
| CD4+CD8-TCR+CD25+Foxp3+;A;CL |
Significance: 0.00565088 | Absent |
| DC_BMD;A;CL |
Significance: 0.00784463 | Absent |
| Erythroblast;A;CL |
Significance: 0.046155400000000006 | Absent |
| DP;A;CL |
Significance: 0.00287901 | Absent |
| DP3a;A;CL |
Significance: 0.0339591 | Absent |
| DP3b;A;CL |
Significance: 0.010110899999999999 | Absent |
| ISP;A;CL |
Significance: 0.0441991 | Absent |
| SML_INTSTN;A;CL |
Significance: 0.0347402 | Absent |
| LRG_INTSTN;A;CL |
Significance: 0.0109256 | Absent |
| Adipose;A;CL |
Significance: 0.0384096 | Absent |
| MN1;D;En |
Significance: 0.035472500000000004 | Absent |
| SPNL_CHRD;A;CL |
Significance: 0.0113863 | Absent |
| PNCRS;A;CL |
Significance: 0.0481532 | Absent |
| BRN;CRBLM;A;CL |
Significance: 0.0348466 | Absent |
| LNG_TRM_HSC;A;CL |
Significance: 0.023705700000000003 | Absent |
| NK;IL2+IL12+;A;CL |
Significance: 0.00296611 | Absent |
| ILC2precrsr;A;CL |
Significance: 0.00215208 | Absent |
| NCR+ILC3;A;CL |
Significance: 0.00248434 | Absent |
| ILC2_Nippo;A;CL |
Significance: 0.00128978 | Absent |
| ILC1;A;CL |
Significance: 0.013227200000000001 | Absent |
| NCR+ILC3+IL23;A;CL |
Significance: 0.0238576 | Absent |
| 3T3-L1;D;En |
Significance: 0.013690899999999999 | Absent |
| CH12_QNTPLE;A;CL |
Significance: 0.0007510539999999999 | Absent |
| CH12;med14;A;CL |
Significance: 0.00899793 | Absent |
| wCH12_drug;A;CL |
Significance: 0.00114667 | Absent |
| mem_precrsrT_SPLND;CD8+;A;GEO |
Significance: 0.00307603 | Absent |
| NK_LVRD;CD19-CD3e-NKp46+DX+Trail-;A;GEO |
Significance: 0.00387051 | Absent |
| NTRPHL;A;GEO |
Significance: 0.045741199999999996 | Absent |
| Mammary_GLND;A;GEO |
Significance: 0.0580379 | Absent |
| ILC2+IL33+IL25;A;GEO |
Significance: 0.00142269 | Absent |
| ILC1;A;GEO |
Significance: 0.00341544 | Absent |
| ILC2;A;GEO |
Significance: 0.0059985 | Absent |
| ILC3;A;GEO |
Significance: 0.031317700000000004 | Absent |
| ILC1_AbxGRMFree;A;GEO |
Significance: 0.029756900000000003 | Absent |
| ILC2_AbxGRMFree;A;GEO |
Significance: 0.00640567 | Absent |
| ILC3_AbxGRMFree;A;GEO |
Significance: 0.012578200000000001 | Absent |
| naiveT;CD8+;A;GEO |
Significance: 0.00471693 | Absent |
| T_LCMV;CD8+;D8;A;GEO |
Significance: 0.00363282 | Absent |
| T_LCMV;CD8+;D33;A;GEO |
Significance: 0.00450349 | Absent |
| T_LCMV;CD8+;D35;A;GEO |
Significance: 0.00144046 | Absent |
| TEff_SPLND;CD8+;A;GEO |
Significance: 0.00700737 | Absent |
| TExh_SPLND;CD8+;A;GEO |
Significance: 0.00578849 | Absent |
| TSLEC_SPLND;CD8+A;GEO |
Significance: 0.00667745 | Absent |
| naiveT;trnsgncTCR_SV40-I_CD8;A;GEO |
Significance: 0.0542256 | Absent |
| Teff;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.0168395 | Absent |
| Teff;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00861912 | Absent |
| cntrl_memT;TCR_SV40-I_CD8+;A;GEO |
Significance: 0.0126089 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D5;A;GEO |
Significance: 0.00134089 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00218338 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D21;A;GEO |
Significance: 0.0102056 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D28;A;GEO |
Significance: 0.00991953 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.00978371 | Absent |
| T_MLD;TCR_SV40-I_CD8+;D60;A;GEO |
Significance: 0.0143447 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.0133523 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00109006 | Absent |
| memT_tmrD_lstr;TCR_SV40-I_CD8+;D35;A;GEO |
Significance: 0.00864754 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D7;A;GEO |
Significance: 0.00307951 | Absent |
| memT_tmrD;TCR_SV40-I_CD8+;D14;A;GEO |
Significance: 0.00856597 | Absent |
| iNKT;A;GEO |
Significance: 0.015808700000000002 | Absent |
| prePLSM_B;A;GEO |
Significance: 0.0121116 | Absent |
| B;B220_CD43;A;GEO |
Significance: 0.0222835 | Absent |
| AML;AE9a;A;GEO |
Significance: 0.00725034 | Absent |
| DC_LPS;2h;A;GEO |
Significance: 0.0382889 | Absent |
| BL_CN_PHT_RCPTR;A;GEO |
Significance: 0.0234885 | Absent |
| CN_PHT_RCPTR;A;GEO |
Significance: 0.0122414 | Absent |
| ThMS_MEC;Aire++;A;GEO |
Significance: 0.029606 | Absent |
| Corticotrope;A;GEO |
Significance: 0.0444772 | Absent |
| Melanotrope;A;GEO |
Significance: 0.0435129 | Absent |
| MegEP;A;CL |
Significance: 0.007534000000000001 | Absent |
| pErythroblast;A;En |
Significance: 0.0188819 | Absent |
| NIH3T3_FBROBLST;D;GEO |
Significance: 0.00203461 | Absent |
| 3134_mammaryADNCRCNM;D;GE |
Significance: 0.00577165 | Absent |
| T_SPLND_blstCLTRD;CD4+;D;GEO |
Significance: 0.00832871 | Absent |
| naiveT_SPLND;CD4+;D;GEO |
Significance: 0.00890508 | Absent |
| Treg;CD4+_CD25+;D;GEO |
Significance: 0.0213246 | Absent |
| apCD4Eff;D;GEO |
Significance: 0.00728942 | Absent |
| apTreg;D;GEO |
Significance: 0.0360824 | Absent |
| 416B_MP;CD34+;D;GEO |
Significance: 0.00236096 | Absent |
| FBRBLST;8wks;D;En |
Significance: 0.0415464 | Absent |
| 3T3-L1;FBRBLST;D;En |
Significance: 0.015348400000000002 | Absent |
| KDNY;8wks;D;En |
Significance: 0.054162300000000003 | Absent |
| LVR;8wks;D;En |
Significance: 0.049810900000000005 | Absent |
| apThEff;CD4+;8wks;D;En. |
Significance: 0.0138506 | Absent |
| abTreg;CD4+_CD25+;8wks;D;En |
Significance: 0.00879376 | Absent |
| apTreg;8wk;D;En |
Significance: 0.0590679 | Absent |
| EP;c-kit+CD71+Ter119+;D;En |
Significance: 0.0207493 | Absent |
| 416B_MP;CD34+;D;En |
Significance: 0.00574113 | Absent |
| Muller;P12;D;En |
Significance: 0.054465099999999995 | Absent |
