Homer de novo Motif Results (/oak/stanford/groups/akundaje/projects/alzheimers_parkinsons/pseudobulk/homer/background_genome_overlap/Cluster7/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 110673
Total background sequences = 108615
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 1e-5455-1.256e+048.23%0.88%47.3bp (58.5bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.912)
More Information | Similar Motifs Found		motif file (matrix)
2 1e-3635-8.371e+0310.39%2.40%50.6bp (62.1bp)Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer(0.993)
More Information | Similar Motifs Found		motif file (matrix)
3 1e-1755-4.043e+0319.40%10.31%52.4bp (56.8bp)Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer(0.892)
More Information | Similar Motifs Found		motif file (matrix)
4 1e-1309-3.016e+0349.84%38.34%54.6bp (63.2bp)Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer(0.868)
More Information | Similar Motifs Found		motif file (matrix)
5 1e-720-1.659e+0346.08%37.60%55.5bp (63.2bp)MSC/MA0665.1/Jaspar(0.690)
More Information | Similar Motifs Found		motif file (matrix)
6 1e-601-1.384e+0356.95%49.06%55.8bp (61.2bp)STAT3/MA0144.2/Jaspar(0.850)
More Information | Similar Motifs Found		motif file (matrix)
7 1e-590-1.360e+033.64%1.42%52.2bp (57.9bp)Rfx1/MA0509.1/Jaspar(0.911)
More Information | Similar Motifs Found		motif file (matrix)
8 1e-546-1.258e+0344.22%36.87%55.9bp (62.2bp)POL009.1_DCE_S_II/Jaspar(0.718)
More Information | Similar Motifs Found		motif file (matrix)
9 1e-529-1.219e+0340.82%33.71%56.1bp (61.9bp)PB0056.1_Rfxdc2_1/Jaspar(0.656)
More Information | Similar Motifs Found		motif file (matrix)
10 1e-498-1.149e+0324.99%19.13%56.4bp (63.3bp)FOS::JUN/MA0099.2/Jaspar(0.586)
More Information | Similar Motifs Found		motif file (matrix)
11 1e-415-9.569e+0239.39%33.12%55.9bp (62.7bp)AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer(0.769)
More Information | Similar Motifs Found		motif file (matrix)
12 1e-394-9.076e+0244.40%38.14%56.1bp (60.7bp)CEBPA/MA0102.3/Jaspar(0.829)
More Information | Similar Motifs Found		motif file (matrix)
13 1e-375-8.642e+024.47%2.35%54.5bp (59.2bp)Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer(0.932)
More Information | Similar Motifs Found		motif file (matrix)
14 1e-304-7.005e+0237.94%32.62%56.1bp (61.7bp)Pou5f1::Sox2/MA0142.1/Jaspar(0.677)
More Information | Similar Motifs Found		motif file (matrix)
15 1e-278-6.407e+0225.06%20.62%56.0bp (63.5bp)JDP2/MA0655.1/Jaspar(0.607)
More Information | Similar Motifs Found		motif file (matrix)
16 1e-269-6.210e+0217.39%13.63%54.7bp (55.1bp)PB0097.1_Zfp281_1/Jaspar(0.859)
More Information | Similar Motifs Found		motif file (matrix)
17 1e-255-5.887e+0215.65%12.16%56.2bp (60.3bp)PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.765)
More Information | Similar Motifs Found		motif file (matrix)
18 1e-171-3.950e+0226.61%23.01%58.5bp (59.9bp)LIN54/MA0619.1/Jaspar(0.774)
More Information | Similar Motifs Found		motif file (matrix)
19 1e-87-2.022e+022.19%1.42%56.9bp (62.0bp)MEIS2/MA0774.1/Jaspar(0.739)
More Information | Similar Motifs Found		motif file (matrix)
20 1e-76-1.751e+0254.01%51.23%57.1bp (60.2bp)TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer(0.779)
More Information | Similar Motifs Found		motif file (matrix)
21 1e-75-1.738e+020.08%0.00%46.7bp (25.2bp)PH0036.1_Gsx2/Jaspar(0.662)
More Information | Similar Motifs Found		motif file (matrix)
22 1e-74-1.707e+020.10%0.01%55.3bp (49.9bp)RUNX2/MA0511.2/Jaspar(0.619)
More Information | Similar Motifs Found		motif file (matrix)
23 *1e-2-5.459e+000.01%0.01%48.6bp (30.8bp)Spz1/MA0111.1/Jaspar(0.582)
More Information | Similar Motifs Found		motif file (matrix)