Information for 11-TGCCGGGAAA (Motif 6)


Reverse Opposite:

p-value:1e-601
log p-value:-1.384e+03
Information Content per bp:1.556
Number of Target Sequences with motif63004.0
Percentage of Target Sequences with motif56.95%
Number of Background Sequences with motif53270.5
Percentage of Background Sequences with motif49.06%
Average Position of motif in Targets99.9 +/- 55.8bp
Average Position of motif in Background100.2 +/- 61.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT3/MA0144.2/Jaspar

Match Rank:1
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-TGCCGGGAAA
CTTCTGGGAAA

STAT1/MA0137.3/Jaspar

Match Rank:2
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TGCCGGGAAA
TTTCCAGGAAA

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TGCCGGGAAA
CTTCCNGGAA-

Stat4/MA0518.1/Jaspar

Match Rank:4
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TGCCGGGAAA---
TTTCCAGGAAATGG

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:5
Score:0.80
Offset:-2
Orientation:reverse strand
Alignment:--TGCCGGGAAA--
NCTTCCNGGAAGNN

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:6
Score:0.80
Offset:-2
Orientation:forward strand
Alignment:--TGCCGGGAAA
NTTTCCNGGAAA

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:7
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TGCCGGGAAA----
TTTCCTGGAAAGNNN

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:8
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TGCCGGGAAA-
TTCTTGGAAAN

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:9
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---TGCCGGGAAA-
NATTTCCNGGAAAT

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:10
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-TGCCGGGAAA-
TTTCTNAGAAAN