Information for 23-TTTAAABC (Motif 18)


Reverse Opposite:

p-value:1e-171
log p-value:-3.950e+02
Information Content per bp:1.559
Number of Target Sequences with motif29441.0
Percentage of Target Sequences with motif26.61%
Number of Background Sequences with motif24986.3
Percentage of Background Sequences with motif23.01%
Average Position of motif in Targets100.5 +/- 58.5bp
Average Position of motif in Background100.1 +/- 59.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

LIN54/MA0619.1/Jaspar

Match Rank:1
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAABC
NATTCAAAT-

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----TTTAAABC
CGGTTTCAAA--

POL012.1_TATA-Box/Jaspar

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTTAAABC------
GTATAAAAGGCGGGG

TBP/MA0108.2/Jaspar

Match Rank:4
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TTTAAABC------
GTATAAAAGGCGGGG

TATA-Box(TBP)/Promoter/Homer

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TTTAAABC-
CCTTTTATAGNC

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-TTTAAABC-
ACTGAAACCA

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:7
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TTTAAABC
NGCAATTAAA--

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--TTTAAABC
ACATCAAAGG

NFAT5/MA0606.1/Jaspar

Match Rank:9
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--TTTAAABC
NATGGAAAAN

PH0158.1_Rhox11_2/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----TTTAAABC-----
TCNCTTTACAGCGNNNT