Information for 5-WGCTGYCA (Motif 4)


Reverse Opposite:

p-value:1e-1309
log p-value:-3.016e+03
Information Content per bp:1.602
Number of Target Sequences with motif55146.0
Percentage of Target Sequences with motif49.84%
Number of Background Sequences with motif41631.0
Percentage of Background Sequences with motif38.34%
Average Position of motif in Targets100.0 +/- 54.6bp
Average Position of motif in Background100.3 +/- 63.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.43
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:1
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:WGCTGYCA
ARNTGACA

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.86
Offset:0
Orientation:forward strand
Alignment:WGCTGYCA--
VGCTGWCAVB

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.85
Offset:2
Orientation:forward strand
Alignment:WGCTGYCA--
--TTGCCAAG

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:4
Score:0.84
Offset:2
Orientation:forward strand
Alignment:WGCTGYCA--
--YTGWCADY

MEIS2/MA0774.1/Jaspar

Match Rank:5
Score:0.84
Offset:1
Orientation:reverse strand
Alignment:WGCTGYCA-
-GCTGTCAA

MEIS3/MA0775.1/Jaspar

Match Rank:6
Score:0.83
Offset:1
Orientation:reverse strand
Alignment:WGCTGYCA-
-CCTGTCAA

Myb/MA0100.2/Jaspar

Match Rank:7
Score:0.82
Offset:-2
Orientation:forward strand
Alignment:--WGCTGYCA
CCAACTGCCA

MEIS1/MA0498.2/Jaspar

Match Rank:8
Score:0.82
Offset:2
Orientation:reverse strand
Alignment:WGCTGYCA-
--NTGTCAN

PH0169.1_Tgif1/Jaspar

Match Rank:9
Score:0.82
Offset:-4
Orientation:reverse strand
Alignment:----WGCTGYCA-----
NNNCAGCTGTCAATATN

PH0170.1_Tgif2/Jaspar

Match Rank:10
Score:0.79
Offset:-4
Orientation:forward strand
Alignment:----WGCTGYCA----
AACTAGCTGTCAATAC