Information for 10-TARCTMCG (Motif 9)


Reverse Opposite:

p-value:1e-529
log p-value:-1.219e+03
Information Content per bp:1.587
Number of Target Sequences with motif45161.0
Percentage of Target Sequences with motif40.82%
Number of Background Sequences with motif36601.6
Percentage of Background Sequences with motif33.71%
Average Position of motif in Targets99.5 +/- 56.1bp
Average Position of motif in Background99.9 +/- 61.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0056.1_Rfxdc2_1/Jaspar

Match Rank:1
Score:0.66
Offset:-5
Orientation:forward strand
Alignment:-----TARCTMCG--
CCGCATAGCAACGGA

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----TARCTMCG--
TACCATAGCAACGGT

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.62
Offset:-9
Orientation:forward strand
Alignment:---------TARCTMCG------
TGTGACCCTTAGCAACCGATTAA

POL013.1_MED-1/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TARCTMCG
--GCTCCG

PH0164.1_Six4/Jaspar

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----TARCTMCG----
ATAAATGACACCTATCA

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---TARCTMCG-
SCCTAGCAACAG

HMBOX1/MA0895.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TARCTMCG
GTTAACTAGN

PH0022.1_Dlx3/Jaspar

Match Rank:8
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------TARCTMCG---
TCGCGATAATTACCGAC

NFIX/MA0671.1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--TARCTMCG
NTTGGCANN-

PB0159.1_Rfx4_2/Jaspar

Match Rank:10
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----TARCTMCG--
TACCCTAGTTACCGA