Information for 16-TNRGAACA (Motif 11)


Reverse Opposite:

p-value:1e-415
log p-value:-9.569e+02
Information Content per bp:1.449
Number of Target Sequences with motif43577.0
Percentage of Target Sequences with motif39.39%
Number of Background Sequences with motif35967.1
Percentage of Background Sequences with motif33.12%
Average Position of motif in Targets100.6 +/- 55.9bp
Average Position of motif in Background100.4 +/- 62.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.19
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TNRGAACA-
CCAGGAACAG

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:TNRGAACA---
-TGGAACAGMA

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:reverse strand
Alignment:--TNRGAACA----
NTTNAGAACAATTA

PB0072.1_Sox5_1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-TNRGAACA-------
TTTAGAACAATAAAAT

POL013.1_MED-1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TNRGAACA
-CGGAGC-

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.68
Offset:-1
Orientation:forward strand
Alignment:-TNRGAACA-------
TTAAGAACAATAAATT

PB0194.1_Zbtb12_2/Jaspar

Match Rank:7
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----TNRGAACA--
TATCATTAGAACGCT

PB0120.1_Foxj1_2/Jaspar

Match Rank:8
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---TNRGAACA----
ATGTCACAACAACAC

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TNRGAACA----
--GGAACAAAGR

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.66
Offset:4
Orientation:reverse strand
Alignment:TNRGAACA--
----AACAAT