Information for 25-CCCTAACCCTAA (Motif 23)


Reverse Opposite:

p-value:1e-2
log p-value:-5.459e+00
Information Content per bp:1.922
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.01%
Number of Background Sequences with motif6.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets100.4 +/- 48.6bp
Average Position of motif in Background95.4 +/- 30.8bp
Strand Bias (log2 ratio + to - strand density)-1.3
Multiplicity (# of sites on avg that occur together)8.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Spz1/MA0111.1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CCCTAACCCTAA
GCTGTTACCCT--

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:CCCTAACCCTAA
-GCTAATCC---

PITX3/MA0714.1/Jaspar

Match Rank:3
Score:0.56
Offset:1
Orientation:forward strand
Alignment:CCCTAACCCTAA
-CTTAATCCC--

MF0009.1_TRP(MYB)_class/Jaspar

Match Rank:4
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CCCTAACCCTAA
----AACCGANA

Dmbx1/MA0883.1/Jaspar

Match Rank:5
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAACCCTAA---
NNNATTAATCCGNTTNA

PH0025.1_Dmbx1/Jaspar

Match Rank:6
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--CCCTAACCCTAA---
NNNATTAATCCGNTTNA

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:7
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CCCTAACCCTAA
-NYTAATCCYB-

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:8
Score:0.54
Offset:3
Orientation:forward strand
Alignment:CCCTAACCCTAA
---TAATCCCN-

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:CCCTAACCCTAA
--YTAATCCY--

OTX2/MA0712.1/Jaspar

Match Rank:10
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CCCTAACCCTAA
--TTAATCCT--