Homer de novo Motif Results (/srv/scratch/imk1/TFBindingPredictionProject/MouseMutantData/indivRep_allPeaks-pr1.IDR0.05.ZF4vsWT.HomerResults//)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 45540
Total background sequences = 74672
* - possible false positive

Rank	Motif	P-value	log P-pvalue	% of Targets	% of Background	STD(Bg STD)	Best Match/Details	Motif File
1		1e-9193	-2.117e+04	69.26%	12.15%	70.5bp (169.7bp)	BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer(0.932) More Information \| Similar Motifs Found	motif file (matrix)
2		1e-1390	-3.201e+03	20.33%	5.25%	94.5bp (184.8bp)	HIC2/MA0738.1/Jaspar(0.757) More Information \| Similar Motifs Found	motif file (matrix)
3		1e-251	-5.796e+02	21.28%	13.70%	116.6bp (173.8bp)	CTCF/MA0531.1/Jaspar(0.838) More Information \| Similar Motifs Found	motif file (matrix)
4		1e-171	-3.958e+02	30.77%	23.41%	112.8bp (189.1bp)	POL009.1_DCE_S_II/Jaspar(0.702) More Information \| Similar Motifs Found	motif file (matrix)
5		1e-129	-2.971e+02	4.21%	1.82%	91.4bp (205.6bp)	kni/dmmpmm(SeSiMCMC)/fly(0.596) More Information \| Similar Motifs Found	motif file (matrix)
6		1e-107	-2.487e+02	7.45%	4.39%	103.6bp (204.9bp)	RME1(MacIsaac)/Yeast(0.678) More Information \| Similar Motifs Found	motif file (matrix)
7		1e-103	-2.379e+02	5.53%	2.99%	94.8bp (207.5bp)	SOK2/MA0385.1/Jaspar(0.729) More Information \| Similar Motifs Found	motif file (matrix)
8		1e-98	-2.263e+02	10.04%	6.62%	102.1bp (197.3bp)	ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer(0.643) More Information \| Similar Motifs Found	motif file (matrix)
9		1e-89	-2.069e+02	3.46%	1.62%	100.7bp (200.3bp)	PB0099.1_Zfp691_1/Jaspar(0.749) More Information \| Similar Motifs Found	motif file (matrix)
10		1e-68	-1.570e+02	2.09%	0.88%	92.9bp (199.6bp)	Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer(0.670) More Information \| Similar Motifs Found	motif file (matrix)
11		1e-65	-1.505e+02	3.07%	1.57%	91.3bp (202.1bp)	GCM1/MA0646.1/Jaspar(0.698) More Information \| Similar Motifs Found	motif file (matrix)
12		1e-58	-1.351e+02	14.66%	11.43%	105.7bp (194.7bp)	PB0208.1_Zscan4_2/Jaspar(0.690) More Information \| Similar Motifs Found	motif file (matrix)
13		1e-51	-1.180e+02	4.51%	2.84%	110.2bp (216.2bp)	SeqBias: CA-repeat(0.697) More Information \| Similar Motifs Found	motif file (matrix)
14		1e-35	-8.171e+01	3.39%	2.18%	111.4bp (202.3bp)	pros/dmmpmm(Bergman)/fly(0.633) More Information \| Similar Motifs Found	motif file (matrix)
15		1e-31	-7.285e+01	2.76%	1.73%	109.2bp (201.8bp)	OPI1/MA0349.1/Jaspar(0.659) More Information \| Similar Motifs Found	motif file (matrix)
16		1e-14	-3.362e+01	3.56%	2.75%	109.3bp (194.3bp)	Run/dmmpmm(Papatsenko)/fly(0.804) More Information \| Similar Motifs Found	motif file (matrix)
17 *		1e-11	-2.535e+01	4.78%	3.97%	107.1bp (203.3bp)	ZNF143\|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer(0.793) More Information \| Similar Motifs Found	motif file (matrix)
18 *		1e-5	-1.322e+01	13.51%	12.58%	116.5bp (206.6bp)	PB0104.1_Zscan4_1/Jaspar(0.711) More Information \| Similar Motifs Found	motif file (matrix)
19 *		1e-2	-6.411e+00	0.60%	0.47%	133.6bp (197.2bp)	EWSR1-FLI1/MA0149.1/Jaspar(0.747) More Information \| Similar Motifs Found	motif file (matrix)
20 *		1e0	-9.534e-01	2.94%	2.91%	122.7bp (213.8bp)	HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer(0.844) More Information \| Similar Motifs Found	motif file (matrix)