Information for 9-TTCCAGAGGAYC (Motif 6)


Reverse Opposite:

p-value:1e-107
log p-value:-2.487e+02
Information Content per bp:1.716
Number of Target Sequences with motif3392.0
Percentage of Target Sequences with motif7.45%
Number of Background Sequences with motif3280.9
Percentage of Background Sequences with motif4.39%
Average Position of motif in Targets178.5 +/- 103.6bp
Average Position of motif in Background230.7 +/- 204.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RME1(MacIsaac)/Yeast

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTCCAGAGGAYC
-TCCAAAGGAA-

RME1/MA0370.1/Jaspar

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:TTCCAGAGGAYC
-TCCAAAGGAA-

Stat6/MA0520.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TTCCAGAGGAYC
CATTTCCTGAGAAAT

REI1/MA0364.1/Jaspar

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTCCAGAGGAYC
--TCAGGGG---

ttk/dmmpmm(Bigfoot)/fly

Match Rank:5
Score:0.62
Offset:5
Orientation:reverse strand
Alignment:TTCCAGAGGAYC
-----CAGGACC

STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TTCCAGAGGAYC
TTCCKNAGAA--

Tal1

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:TTCCAGAGGAYC
---CAGATG---

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:8
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:TTCCAGAGGAYC
----TTAGGAC-

MSN4/Literature(Harbison)/Yeast

Match Rank:9
Score:0.59
Offset:3
Orientation:forward strand
Alignment:TTCCAGAGGAYC
---AAGGGGN--

ttk/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:TTCCAGAGGAYC
---GCCAGGACC