Information for 4-GRTGGCGC (Motif 3)


Reverse Opposite:

p-value:1e-251
log p-value:-5.796e+02
Information Content per bp:1.829
Number of Target Sequences with motif9690.0
Percentage of Target Sequences with motif21.28%
Number of Background Sequences with motif10231.7
Percentage of Background Sequences with motif13.70%
Average Position of motif in Targets190.8 +/- 116.6bp
Average Position of motif in Background217.8 +/- 173.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0531.1/Jaspar

Match Rank:1
Score:0.84
Offset:-6
Orientation:forward strand
Alignment:------GRTGGCGC-
CCGCTAGATGGCGCC

RPN4/MA0373.1/Jaspar

Match Rank:2
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GRTGGCGC
GGTGGCG-

RAP2-10/MA0980.1/Jaspar

Match Rank:3
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:GRTGGCGC
GGCGGCGC

brk/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GRTGGCGC-
-CTGGCGCC

brk/MA0213.1/Jaspar

Match Rank:5
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GRTGGCGC-
-CTGGCGCC

brk/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.74
Offset:1
Orientation:forward strand
Alignment:GRTGGCGC-
-CTGGCGCC

RAP2-6/MA1052.1/Jaspar

Match Rank:7
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:GRTGGCGC
GGCGGCGC

ERF109/MA1053.1/Jaspar

Match Rank:8
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:GRTGGCGC
GGCGGCGC

brk/dmmpmm(Bigfoot)/fly

Match Rank:9
Score:0.72
Offset:2
Orientation:reverse strand
Alignment:GRTGGCGC-
--CGGCGCC

CRF4/MA0976.1/Jaspar

Match Rank:10
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GRTGGCGC
GGCGGCGC