Information for 25-CATCCATC (Motif 20)


Reverse Opposite:

p-value:1e0
log p-value:-9.534e-01
Information Content per bp:1.954
Number of Target Sequences with motif1340.0
Percentage of Target Sequences with motif2.94%
Number of Background Sequences with motif2175.0
Percentage of Background Sequences with motif2.91%
Average Position of motif in Targets184.6 +/- 122.7bp
Average Position of motif in Background237.3 +/- 213.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--CATCCATC--
GYCATCMATCAT

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:2
Score:0.73
Offset:0
Orientation:reverse strand
Alignment:CATCCATC--
CATYAATCAT

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CATCCATC-
TCATCAATCA

PBX1/MA0070.1/Jaspar

Match Rank:4
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-CATCCATC---
CCATCAATCAAA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---CATCCATC-
RGCCATYAATCA

PB0144.1_Lef1_2/Jaspar

Match Rank:6
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---CATCCATC-----
GAAGATCAATCACTTA

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CATCCATC-
GCCATAAATCA

PH0134.1_Pbx1/Jaspar

Match Rank:8
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CATCCATC--------
TCACCCATCAATAAACA

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:9
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CATCCATC-----
GAAGATCAATCACTAA

GCR1/MA0304.1/Jaspar

Match Rank:10
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CATCCATC
GGCTTCCA--