Information for 1-CCACYAGRKGGC (Motif 1)


Reverse Opposite:

p-value:1e-9193
log p-value:-2.117e+04
Information Content per bp:1.720
Number of Target Sequences with motif31538.0
Percentage of Target Sequences with motif69.26%
Number of Background Sequences with motif9078.9
Percentage of Background Sequences with motif12.15%
Average Position of motif in Targets174.5 +/- 70.5bp
Average Position of motif in Background204.9 +/- 169.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGRKGGC-------
GCCASCAGGGGGCGCYVNNG

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---CCACYAGRKGGC----
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCACYAGRKGGC-----
TGGCCACCAGGTGGCACTNT

CTCF/MA0531.1/Jaspar

Match Rank:4
Score:0.77
Offset:0
Orientation:forward strand
Alignment:CCACYAGRKGGC---
CCGCTAGATGGCGCC

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CCACYAGRKGGC
--AACAGATGGC

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGRKGGC-
NCNCAGCGGGGGGTC

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCACYAGRKGGC
CACAGCAGGGGG-

PB0076.1_Sp4_1/Jaspar

Match Rank:8
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:CCACYAGRKGGC------
-NNNAAGGGGGCGGGNNN

ZIC1/MA0696.1/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGRKGGC-
CACAGCGGGGGGTC

opa/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCACYAGRKGGC-
-CAGCGGGGGGTC