Information for 3-GRGGGCAGYA (Motif 2)


Reverse Opposite:

p-value:1e-1390
log p-value:-3.201e+03
Information Content per bp:1.694
Number of Target Sequences with motif9258.0
Percentage of Target Sequences with motif20.33%
Number of Background Sequences with motif3924.4
Percentage of Background Sequences with motif5.25%
Average Position of motif in Targets177.2 +/- 94.5bp
Average Position of motif in Background226.2 +/- 184.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:reverse strand
Alignment:-GRGGGCAGYA
NGTGGGCAT--

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:reverse strand
Alignment:-GRGGGCAGYA
GGTTGGCAT--

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GRGGGCAGYA
TNNGGGCAG--

PB0029.1_Hic1_1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GRGGGCAGYA-
NGTAGGTTGGCATNNN

RCS1/RCS1_H2O2Hi/35-RCS1(Harbison)/Yeast

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GRGGGCAGYA
GGGTGCANT-

abi4/MA0123.1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GRGGGCAGYA
GGGGGCACCG

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:7
Score:0.65
Offset:-9
Orientation:reverse strand
Alignment:---------GRGGGCAGYA-
TGGCCACCAGGTGGCACTNT

PB0057.1_Rxra_1/Jaspar

Match Rank:8
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----GRGGGCAGYA--
NTNNNGGGGTCANGNNN

PHD1(MacIsaac)/Yeast

Match Rank:9
Score:0.64
Offset:2
Orientation:forward strand
Alignment:GRGGGCAGYA
--AGGCAC--

usp/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GRGGGCAGYA
GGGGTCACG-