Information for 25-AAGGAACGAAGG (Motif 19)


Reverse Opposite:

p-value:1e-2
log p-value:-6.411e+00
Information Content per bp:1.693
Number of Target Sequences with motif271.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif350.0
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets220.1 +/- 133.6bp
Average Position of motif in Background271.1 +/- 197.2bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.75
Offset:-2
Orientation:forward strand
Alignment:--AAGGAACGAAGG----
GGAAGGAAGGAAGGAAGG

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:AAGGAACGAAGG
--GGAACAAAGR

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AAGGAACGAAGG-
-AGAAACGAAAGT

AT/dmmpmm(Papatsenko)/fly

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AAGGAACGAAGG
-ATGAACGAAT-

pan/dmmpmm(Bergman)/fly

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGGAACGAAGG
-AAGATCAAAGG

Sox3/MA0514.1/Jaspar

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AAGGAACGAAGG
--AAAACAAAGG

PB0061.1_Sox11_1/Jaspar

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGGAACGAAGG----
ATAAGAACAAAGGACTA

PB0071.1_Sox4_1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AAGGAACGAAGG----
AGAAGAACAAAGGACTA

Sox2/MA0143.3/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:AAGGAACGAAGG
----AACAAAGG

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AAGGAACGAAGG-
---GAACAATGGN