Homer de novo Motif Results (/oak/stanford/groups/akundaje/projects/alzheimers_parkinsons/pseudobulk/homer/background_genome_overlap/Cluster17/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 78600
Total background sequences = 78000
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 1e-1588-3.657e+033.55%0.40%44.1bp (58.4bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.911)
More Information | Similar Motifs Found		motif file (matrix)
2 1e-629-1.450e+0336.75%27.90%54.2bp (61.5bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.943)
More Information | Similar Motifs Found		motif file (matrix)
3 1e-373-8.600e+0251.45%44.09%55.5bp (60.1bp)YY2/MA0748.1/Jaspar(0.697)
More Information | Similar Motifs Found		motif file (matrix)
4 1e-278-6.403e+0251.02%44.68%55.4bp (58.8bp)NFYB/MA0502.1/Jaspar(0.718)
More Information | Similar Motifs Found		motif file (matrix)
5 1e-239-5.516e+0247.95%42.09%55.4bp (59.1bp)STAT1/MA0137.3/Jaspar(0.921)
More Information | Similar Motifs Found		motif file (matrix)
6 1e-230-5.319e+0214.71%10.93%56.2bp (58.3bp)Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer(0.932)
More Information | Similar Motifs Found		motif file (matrix)
7 1e-194-4.469e+0244.82%39.59%55.4bp (60.1bp)POL009.1_DCE_S_II/Jaspar(0.705)
More Information | Similar Motifs Found		motif file (matrix)
8 1e-190-4.394e+0228.32%23.75%55.1bp (60.0bp)Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer(0.856)
More Information | Similar Motifs Found		motif file (matrix)
9 1e-175-4.033e+027.32%4.98%53.1bp (55.5bp)Sp1(Zf)/Promoter/Homer(0.924)
More Information | Similar Motifs Found		motif file (matrix)
10 1e-164-3.785e+025.35%3.43%53.1bp (58.5bp)Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer(0.927)
More Information | Similar Motifs Found		motif file (matrix)
11 1e-162-3.749e+0226.13%22.02%55.5bp (57.6bp)KLF5/MA0599.1/Jaspar(0.698)
More Information | Similar Motifs Found		motif file (matrix)
12 1e-123-2.854e+0232.45%28.58%55.6bp (58.9bp)PB0013.1_Eomes_1/Jaspar(0.639)
More Information | Similar Motifs Found		motif file (matrix)
13 1e-123-2.843e+0220.03%16.79%57.3bp (60.6bp)ATF4/MA0833.1/Jaspar(0.659)
More Information | Similar Motifs Found		motif file (matrix)
14 1e-113-2.615e+0280.53%77.20%56.5bp (59.5bp)NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer(0.778)
More Information | Similar Motifs Found		motif file (matrix)
15 1e-112-2.592e+0217.97%15.02%56.7bp (57.5bp)Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer(0.687)
More Information | Similar Motifs Found		motif file (matrix)
16 1e-110-2.535e+0225.49%22.12%55.4bp (58.5bp)EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer(0.691)
More Information | Similar Motifs Found		motif file (matrix)
17 1e-108-2.501e+027.11%5.25%53.5bp (58.0bp)RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer(0.716)
More Information | Similar Motifs Found		motif file (matrix)
18 1e-93-2.159e+0213.80%11.40%55.5bp (59.2bp)Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer(0.829)
More Information | Similar Motifs Found		motif file (matrix)
19 1e-83-1.913e+028.33%6.55%55.9bp (59.2bp)PB0134.1_Hnf4a_2/Jaspar(0.675)
More Information | Similar Motifs Found		motif file (matrix)
20 1e-81-1.872e+022.44%1.53%54.1bp (56.7bp)ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer(0.924)
More Information | Similar Motifs Found		motif file (matrix)
21 1e-77-1.794e+021.45%0.79%55.3bp (56.0bp)NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer(0.925)
More Information | Similar Motifs Found		motif file (matrix)
22 1e-71-1.656e+020.74%0.32%53.4bp (53.8bp)GFY(?)/Promoter/Homer(0.988)
More Information | Similar Motifs Found		motif file (matrix)
23 1e-70-1.620e+021.70%1.01%54.6bp (52.8bp)CRE(bZIP)/Promoter/Homer(0.956)
More Information | Similar Motifs Found		motif file (matrix)
24 1e-66-1.524e+0213.67%11.65%56.8bp (57.9bp)PB0168.1_Sox14_2/Jaspar(0.838)
More Information | Similar Motifs Found		motif file (matrix)
25 1e-58-1.340e+020.09%0.01%44.7bp (14.9bp)RUNX2/MA0511.2/Jaspar(0.581)
More Information | Similar Motifs Found		motif file (matrix)
26 1e-54-1.264e+021.25%0.73%54.2bp (56.2bp)MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer(0.953)
More Information | Similar Motifs Found		motif file (matrix)
27 1e-29-6.802e+010.06%0.01%56.1bp (14.2bp)MF0001.1_ETS_class/Jaspar(0.554)
More Information | Similar Motifs Found		motif file (matrix)
28 1e-26-6.111e+010.04%0.00%56.0bp (37.0bp)ZNF410/MA0752.1/Jaspar(0.611)
More Information | Similar Motifs Found		motif file (matrix)
29 *1e-5-1.194e+010.10%0.06%52.5bp (51.3bp)TFAP2C(var.2)/MA0814.1/Jaspar(0.565)
More Information | Similar Motifs Found		motif file (matrix)