Information for 1-SCTGCCAR (Motif 2)


Reverse Opposite:

p-value:1e-629
log p-value:-1.450e+03
Information Content per bp:1.755
Number of Target Sequences with motif28864.0
Percentage of Target Sequences with motif36.75%
Number of Background Sequences with motif21762.0
Percentage of Background Sequences with motif27.90%
Average Position of motif in Targets100.2 +/- 54.2bp
Average Position of motif in Background100.6 +/- 61.5bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.36
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.94
Offset:1
Orientation:forward strand
Alignment:SCTGCCAR-
-TTGCCAAG

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:forward strand
Alignment:SCTGCCAR-
CGTGCCAAG

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.87
Offset:2
Orientation:reverse strand
Alignment:SCTGCCAR
--TGCCAA

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.86
Offset:0
Orientation:forward strand
Alignment:SCTGCCAR--
GGTGCCAAGT

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.79
Offset:-1
Orientation:forward strand
Alignment:-SCTGCCAR-
VGCTGWCAVB

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.79
Offset:1
Orientation:forward strand
Alignment:SCTGCCAR--
-ATGCCAACC

MEIS2/MA0774.1/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:SCTGCCAR
GCTGTCAA

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:SCTGCCAR
RHTGWCAR

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:9
Score:0.78
Offset:2
Orientation:forward strand
Alignment:SCTGCCAR--
--TGTCANYT

MEIS3/MA0775.1/Jaspar

Match Rank:10
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:SCTGCCAR
CCTGTCAA