Information for 2-GCCHTTTA (Motif 3)


Reverse Opposite:

p-value:1e-373
log p-value:-8.600e+02
Information Content per bp:1.541
Number of Target Sequences with motif40412.0
Percentage of Target Sequences with motif51.45%
Number of Background Sequences with motif34389.6
Percentage of Background Sequences with motif44.09%
Average Position of motif in Targets99.9 +/- 55.5bp
Average Position of motif in Background99.8 +/- 60.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----GCCHTTTA
GTCCGCCATTA-

YY1/MA0095.2/Jaspar

Match Rank:2
Score:0.66
Offset:-3
Orientation:reverse strand
Alignment:---GCCHTTTA-
GCNGCCATCTTG

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GCCHTTTA
CGTGCCAAG--

Barhl1/MA0877.1/Jaspar

Match Rank:4
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GCCHTTTA--
NNCAATTANN

NFIC/MA0161.1/Jaspar

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCHTTTA
TGCCAA---

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GCCHTTTA
AGCGCGCC-----

BARHL2/MA0635.1/Jaspar

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GCCHTTTA--
ANCGTTTANN

POL004.1_CCAAT-box/Jaspar

Match Rank:8
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCCHTTTA
ACTAGCCAATCA

E2F3/MA0469.2/Jaspar

Match Rank:9
Score:0.62
Offset:-9
Orientation:reverse strand
Alignment:---------GCCHTTTA-
AAAAATGGCGCCATTTTT

PH0098.1_Lhx8/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:reverse strand
Alignment:----GCCHTTTA-----
CACCGCTAATTAGNNGN