Information for 1-CCACTAGRKGGC (Motif 1)


Reverse Opposite:

p-value:1e-1588
log p-value:-3.657e+03
Information Content per bp:1.768
Number of Target Sequences with motif2788.0
Percentage of Target Sequences with motif3.55%
Number of Background Sequences with motif312.8
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets100.2 +/- 44.1bp
Average Position of motif in Background100.6 +/- 58.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:1
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCACTAGRKGGC-----
TGGCCACCAGGTGGCACTNT

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.91
Offset:-3
Orientation:forward strand
Alignment:---CCACTAGRKGGC----
TGGCCACCAGGGGGCGCTA

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.90
Offset:-1
Orientation:reverse strand
Alignment:-CCACTAGRKGGC-------
GCCASCAGGGGGCGCYVNNG

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:4
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:CCACTAGRKGGC
--AACAGATGGC

ZNF354C/MA0130.1/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGRKGGC
ATCCAC--------

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CCACTAGRKGGC
CACAGCAGGGGG-

PB0101.1_Zic1_1/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCACTAGRKGGC
CACCCCCGGGGGGG

TAL1::TCF3/MA0091.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:CCACTAGRKGGC--
--AACAGATGGTCN

ZIC4/MA0751.1/Jaspar

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CCACTAGRKGGC-
NCNCAGCGGGGGGTC

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CCACTAGRKGGC
VNAVCAGCTGGC