Information for 4-TTCCGGGAAA (Motif 5)


Reverse Opposite:

p-value:1e-239
log p-value:-5.516e+02
Information Content per bp:1.533
Number of Target Sequences with motif37661.0
Percentage of Target Sequences with motif47.95%
Number of Background Sequences with motif32827.3
Percentage of Background Sequences with motif42.09%
Average Position of motif in Targets100.0 +/- 55.4bp
Average Position of motif in Background99.5 +/- 59.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.35
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT1/MA0137.3/Jaspar

Match Rank:1
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-TTCCGGGAAA
TTTCCAGGAAA

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-TTCCGGGAAA
CTTCCNGGAA-

Stat4/MA0518.1/Jaspar

Match Rank:3
Score:0.90
Offset:-1
Orientation:forward strand
Alignment:-TTCCGGGAAA---
TTTCCAGGAAATGG

STAT3/MA0144.2/Jaspar

Match Rank:4
Score:0.89
Offset:-1
Orientation:forward strand
Alignment:-TTCCGGGAAA
CTTCTGGGAAA

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:5
Score:0.89
Offset:-1
Orientation:reverse strand
Alignment:-TTCCGGGAAA-
TTTCCNGGAAAN

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:6
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TTCCGGGAAA--
ATTTCCNGGAAATN

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:7
Score:0.88
Offset:-2
Orientation:reverse strand
Alignment:--TTCCGGGAAA--
NCTTCCNGGAAGNN

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:8
Score:0.86
Offset:0
Orientation:reverse strand
Alignment:TTCCGGGAAA-
TTCTTGGAAAN

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:9
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-TTCCGGGAAA----
TTTCCTGGAAAGNNN

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:10
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TTCCGGGAAA
NTTTCTNAGAAA