Information for 5-GVNCTAATTA (Motif 6)


Reverse Opposite:

p-value:1e-230
log p-value:-5.319e+02
Information Content per bp:1.556
Number of Target Sequences with motif11554.0
Percentage of Target Sequences with motif14.71%
Number of Background Sequences with motif8522.2
Percentage of Background Sequences with motif10.93%
Average Position of motif in Targets100.5 +/- 56.2bp
Average Position of motif in Background101.2 +/- 58.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:1
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:GVNCTAATTA
--NCTAATTA

NOTO/MA0710.1/Jaspar

Match Rank:2
Score:0.92
Offset:2
Orientation:forward strand
Alignment:GVNCTAATTA--
--GCTAATTAGC

VSX2/MA0726.1/Jaspar

Match Rank:3
Score:0.92
Offset:3
Orientation:forward strand
Alignment:GVNCTAATTA-
---CTAATTAG

VSX1/MA0725.1/Jaspar

Match Rank:4
Score:0.91
Offset:3
Orientation:forward strand
Alignment:GVNCTAATTA-
---CTAATTAT

LHX2/MA0700.1/Jaspar

Match Rank:5
Score:0.91
Offset:2
Orientation:forward strand
Alignment:GVNCTAATTA--
--ACTAATTAAC

EMX2/MA0886.1/Jaspar

Match Rank:6
Score:0.90
Offset:2
Orientation:reverse strand
Alignment:GVNCTAATTA--
--NCTAATTANN

EN1/MA0027.2/Jaspar

Match Rank:7
Score:0.90
Offset:3
Orientation:reverse strand
Alignment:GVNCTAATTA-
---CTAATTAG

Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer

Match Rank:8
Score:0.90
Offset:1
Orientation:forward strand
Alignment:GVNCTAATTA-
-NNYTAATTAR

LBX1/MA0618.1/Jaspar

Match Rank:9
Score:0.90
Offset:3
Orientation:reverse strand
Alignment:GVNCTAATTA-
---CTAATTAA

VAX2/MA0723.1/Jaspar

Match Rank:10
Score:0.90
Offset:3
Orientation:forward strand
Alignment:GVNCTAATTA-
---CTAATTAC