Information for 9-GTTKCCATGGCA (Motif 10)


Reverse Opposite:

p-value:1e-164
log p-value:-3.785e+02
Information Content per bp:1.664
Number of Target Sequences with motif4202.0
Percentage of Target Sequences with motif5.35%
Number of Background Sequences with motif2676.0
Percentage of Background Sequences with motif3.43%
Average Position of motif in Targets100.6 +/- 53.1bp
Average Position of motif in Background97.7 +/- 58.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:1
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-GTTKCCATGGCA-
NGTTGCCATGGCAA

X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:2
Score:0.91
Offset:-1
Orientation:forward strand
Alignment:-GTTKCCATGGCA-
GGTTGCCATGGCAA

Rfx1/MA0509.1/Jaspar

Match Rank:3
Score:0.88
Offset:0
Orientation:reverse strand
Alignment:GTTKCCATGGCA--
GTTGCCATGGNAAC

Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer

Match Rank:4
Score:0.87
Offset:0
Orientation:forward strand
Alignment:GTTKCCATGGCA---
GTTGCCATGGCAACM

RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer

Match Rank:5
Score:0.86
Offset:-2
Orientation:forward strand
Alignment:--GTTKCCATGGCA--
CGGTTGCCATGGCAAC

RFX3/MA0798.1/Jaspar

Match Rank:6
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GTTKCCATGGCA---
CGTTGCCATGGCAACN

RFX5/MA0510.2/Jaspar

Match Rank:7
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GTTKCCATGGCA---
CGTTGCCATGGCAACG

RFX2/MA0600.2/Jaspar

Match Rank:8
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-GTTKCCATGGCA---
CGTTGCCATGGCAACG

RFX4/MA0799.1/Jaspar

Match Rank:9
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GTTKCCATGGCA---
CGTTGCCATGGCAACN

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--GTTKCCATGGCA
CTGTTGCTAGGS--