Information for 25-CCTAACGCTA (Motif 29)


Reverse Opposite:

p-value:1e-5
log p-value:-1.194e+01
Information Content per bp:1.930
Number of Target Sequences with motif78.0
Percentage of Target Sequences with motif0.10%
Number of Background Sequences with motif45.7
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets102.6 +/- 52.5bp
Average Position of motif in Background97.2 +/- 51.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)2.16
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:1
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CCTAACGCTA
AGCCTCAGGCA-

TFAP2A/MA0003.3/Jaspar

Match Rank:2
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCTAACGCTA
CGCCTCAGGCA-

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CCTAACGCTA
AGCCTCAGGCA-

ZBED1/MA0749.1/Jaspar

Match Rank:4
Score:0.54
Offset:1
Orientation:forward strand
Alignment:CCTAACGCTA----
-CTATCGCGACATA

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:5
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----CCTAACGCTA-
ATTGCCTGAGGCAAT

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CCTAACGCTA
GCTAATCC--

GSC2/MA0891.1/Jaspar

Match Rank:7
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CCTAACGCTA
CCTAATCCGC

SREBF1/MA0595.1/Jaspar

Match Rank:8
Score:0.53
Offset:1
Orientation:forward strand
Alignment:CCTAACGCTA-
-ATCACCCCAC

AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CCTAACGCTA-
SCCTSAGGSCAW

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.52
Offset:1
Orientation:forward strand
Alignment:CCTAACGCTA-
-ATCACCCCAT