Homer de novo Motif Results (/oak/stanford/groups/akundaje/projects/alzheimers_parkinsons/pseudobulk/homer/background_genome_overlap/Cluster15/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 101725
Total background sequences = 100305
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 1e-4411-1.016e+046.57%0.60%51.7bp (59.5bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.917)
More Information | Similar Motifs Found		motif file (matrix)
2 1e-2001-4.609e+0335.30%22.09%54.0bp (64.4bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.973)
More Information | Similar Motifs Found		motif file (matrix)
3 1e-899-2.072e+0363.24%53.26%55.5bp (64.0bp)POL010.1_DCE_S_III/Jaspar(0.654)
More Information | Similar Motifs Found		motif file (matrix)
4 1e-827-1.905e+0361.99%52.40%57.0bp (62.4bp)Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer(0.732)
More Information | Similar Motifs Found		motif file (matrix)
5 1e-730-1.683e+0351.99%42.95%55.7bp (62.8bp)STAT1/MA0137.3/Jaspar(0.889)
More Information | Similar Motifs Found		motif file (matrix)
6 1e-605-1.393e+0345.13%37.05%56.0bp (62.9bp)PB0099.1_Zfp691_1/Jaspar(0.642)
More Information | Similar Motifs Found		motif file (matrix)
7 1e-447-1.031e+0342.63%35.73%57.4bp (63.0bp)CHR(?)/Hela-CellCycle-Expression/Homer(0.743)
More Information | Similar Motifs Found		motif file (matrix)
8 1e-440-1.015e+0310.41%6.63%55.5bp (59.6bp)Rfx1/MA0509.1/Jaspar(0.892)
More Information | Similar Motifs Found		motif file (matrix)
9 1e-429-9.898e+0251.85%44.91%55.8bp (63.0bp)RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer(0.733)
More Information | Similar Motifs Found		motif file (matrix)
10 1e-383-8.832e+0219.28%14.46%55.9bp (65.5bp)E2F3/MA0469.2/Jaspar(0.666)
More Information | Similar Motifs Found		motif file (matrix)
11 1e-377-8.693e+0231.46%25.64%55.5bp (61.9bp)AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.657)
More Information | Similar Motifs Found		motif file (matrix)
12 1e-367-8.457e+0226.01%20.65%56.2bp (62.8bp)Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer(0.707)
More Information | Similar Motifs Found		motif file (matrix)
13 1e-362-8.337e+0233.63%27.80%57.0bp (60.7bp)PB0168.1_Sox14_2/Jaspar(0.745)
More Information | Similar Motifs Found		motif file (matrix)
14 1e-348-8.025e+0227.32%22.00%56.5bp (62.5bp)PB0178.1_Sox8_2/Jaspar(0.682)
More Information | Similar Motifs Found		motif file (matrix)
15 1e-272-6.275e+0255.03%49.50%56.3bp (64.7bp)NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer(0.781)
More Information | Similar Motifs Found		motif file (matrix)
16 1e-204-4.720e+0213.00%10.00%57.7bp (63.5bp)Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer(0.755)
More Information | Similar Motifs Found		motif file (matrix)
17 1e-195-4.496e+0233.56%29.24%55.8bp (58.4bp)Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer(0.865)
More Information | Similar Motifs Found		motif file (matrix)
18 1e-188-4.340e+021.61%0.71%56.6bp (56.5bp)RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer(0.950)
More Information | Similar Motifs Found		motif file (matrix)
19 1e-124-2.859e+024.23%2.89%53.6bp (62.4bp)NFIX/MA0671.1/Jaspar(0.693)
More Information | Similar Motifs Found		motif file (matrix)
20 1e-96-2.212e+020.10%0.01%49.0bp (30.8bp)ZBTB33/MA0527.1/Jaspar(0.582)
More Information | Similar Motifs Found		motif file (matrix)
21 1e-91-2.104e+024.91%3.66%56.1bp (64.0bp)PB0186.1_Tcf3_2/Jaspar(0.791)
More Information | Similar Motifs Found		motif file (matrix)
22 1e-66-1.521e+020.15%0.03%50.0bp (57.7bp)IRF2/MA0051.1/Jaspar(0.676)
More Information | Similar Motifs Found		motif file (matrix)
23 1e-53-1.221e+020.06%0.00%55.7bp (60.5bp)TGIF2/MA0797.1/Jaspar(0.715)
More Information | Similar Motifs Found		motif file (matrix)