Information for 19-TTGGAACAAA (Motif 16)


Reverse Opposite:

p-value:1e-204
log p-value:-4.720e+02
Information Content per bp:1.644
Number of Target Sequences with motif13222.0
Percentage of Target Sequences with motif13.00%
Number of Background Sequences with motif10002.7
Percentage of Background Sequences with motif10.00%
Average Position of motif in Targets100.8 +/- 57.7bp
Average Position of motif in Background99.3 +/- 63.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:1
Score:0.76
Offset:2
Orientation:reverse strand
Alignment:TTGGAACAAA--
--GGAACAAAGR

PB0071.1_Sox4_1/Jaspar

Match Rank:2
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-TTGGAACAAA------
AGAAGAACAAAGGACTA

PB0061.1_Sox11_1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TTGGAACAAA------
ATAAGAACAAAGGACTA

Sox3/MA0514.1/Jaspar

Match Rank:4
Score:0.69
Offset:2
Orientation:reverse strand
Alignment:TTGGAACAAA--
--AAAACAAAGG

ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:TTGGAACAAA-
-TGGAACAGMA

NFATC2/MA0152.1/Jaspar

Match Rank:6
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTGGAACAAA
-TGGAAAA--

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.67
Offset:4
Orientation:reverse strand
Alignment:TTGGAACAAA
----AACAAT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:8
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TTGGAACAAA--
--RNAACAATGG

PB0072.1_Sox5_1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-TTGGAACAAA-----
TTTAGAACAATAAAAT

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TTGGAACAAA--
--VRRACAAWGG