Information for 2-NNNYTGGCAR (Motif 2)


Reverse Opposite:

p-value:1e-2001
log p-value:-4.609e+03
Information Content per bp:1.515
Number of Target Sequences with motif35908.0
Percentage of Target Sequences with motif35.30%
Number of Background Sequences with motif22089.2
Percentage of Background Sequences with motif22.09%
Average Position of motif in Targets99.9 +/- 54.0bp
Average Position of motif in Background99.7 +/- 64.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.28
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:1
Score:0.97
Offset:2
Orientation:reverse strand
Alignment:NNNYTGGCAR
--CTTGGCAA

NFIX/MA0671.1/Jaspar

Match Rank:2
Score:0.92
Offset:2
Orientation:reverse strand
Alignment:NNNYTGGCAR-
--NTTGGCANN

NFIC/MA0161.1/Jaspar

Match Rank:3
Score:0.91
Offset:3
Orientation:forward strand
Alignment:NNNYTGGCAR
---TTGGCA-

NFIA/MA0670.1/Jaspar

Match Rank:4
Score:0.89
Offset:1
Orientation:reverse strand
Alignment:NNNYTGGCAR-
-NNTTGGCANN

Hic1/MA0739.1/Jaspar

Match Rank:5
Score:0.81
Offset:1
Orientation:reverse strand
Alignment:NNNYTGGCAR
-GGTTGGCAT

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:6
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:NNNYTGGCAR
-ARNTGACA-

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.76
Offset:3
Orientation:forward strand
Alignment:NNNYTGGCAR-
---YTGWCADY

PB0029.1_Hic1_1/Jaspar

Match Rank:8
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---NNNYTGGCAR---
NGTAGGTTGGCATNNN

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:9
Score:0.73
Offset:2
Orientation:reverse strand
Alignment:NNNYTGGCAR--
--VBTGWCAGCB

THAP1/MA0597.1/Jaspar

Match Rank:10
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:NNNYTGGCAR
-TNNGGGCAG