Information for 21-AAGTAGGTCA (Motif 18)


Reverse Opposite:

p-value:1e-188
log p-value:-4.340e+02
Information Content per bp:1.776
Number of Target Sequences with motif1643.0
Percentage of Target Sequences with motif1.61%
Number of Background Sequences with motif713.7
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets99.5 +/- 56.6bp
Average Position of motif in Background101.5 +/- 56.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.95
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTCA
AAYTAGGTCA

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.94
Offset:-3
Orientation:forward strand
Alignment:---AAGTAGGTCA-
TATAAGTAGGTCAA

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AAGTAGGTCA
ATCAAGGTCA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.73
Offset:4
Orientation:forward strand
Alignment:AAGTAGGTCA
----AGGTCA

Atf1/MA0604.1/Jaspar

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:AAGTAGGTCA-
---TACGTCAT

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.64
Offset:3
Orientation:forward strand
Alignment:AAGTAGGTCA-
---AAGGTCAC

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:7
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------AAGTAGGTCA
GTAGGTCACTGGGTCA

PB0048.1_Nkx3-1_1/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------AAGTAGGTCA-
NTNNTTAAGTGGNTNAN

ESR2/MA0258.2/Jaspar

Match Rank:9
Score:0.62
Offset:4
Orientation:forward strand
Alignment:AAGTAGGTCA---------
----AGGTCACCCTGACCT

PH0115.1_Nkx2-6/Jaspar

Match Rank:10
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------AAGTAGGTCA
AATNTTAAGTGGNTNN