Information for 5-GCYAAGTG (Motif 4)


Reverse Opposite:

p-value:1e-827
log p-value:-1.905e+03
Information Content per bp:1.642
Number of Target Sequences with motif63069.0
Percentage of Target Sequences with motif61.99%
Number of Background Sequences with motif52404.1
Percentage of Background Sequences with motif52.40%
Average Position of motif in Targets100.1 +/- 57.0bp
Average Position of motif in Background99.8 +/- 62.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.73
Offset:1
Orientation:forward strand
Alignment:GCYAAGTG---
-TTRAGTGSYK

PH0089.1_Isx/Jaspar

Match Rank:2
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---GCYAAGTG-----
ACTCCTAATTAGTCGT

LHX2/MA0700.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCYAAGTG--
ACTAATTAAC

ISL2/MA0914.1/Jaspar

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GCYAAGTG-
-TTAAGTGC

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCYAAGTG
GGTGCCAAGT-

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:GCYAAGTG
NCTAATTA

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:7
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GCYAAGTG-
-CTAATKGV

VSX2/MA0726.1/Jaspar

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:GCYAAGTG-
-CTAATTAG

NFIC/MA0161.1/Jaspar

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GCYAAGTG
TGCCAA---

PH0034.1_Gbx2/Jaspar

Match Rank:10
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---GCYAAGTG------
AGCGCTAATTAGCGATT