Information for 9-GCTTTKAAAA (Motif 7)


Reverse Opposite:

p-value:1e-447
log p-value:-1.031e+03
Information Content per bp:1.486
Number of Target Sequences with motif43366.0
Percentage of Target Sequences with motif42.63%
Number of Background Sequences with motif35736.1
Percentage of Background Sequences with motif35.73%
Average Position of motif in Targets99.9 +/- 57.4bp
Average Position of motif in Background100.8 +/- 63.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.17
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.74
Offset:2
Orientation:reverse strand
Alignment:GCTTTKAAAA--
--TTTGAAACCG

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GCTTTKAAAA
-NATTCAAAT

Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GCTTTKAAAA
CCTTTGATGT

TATA-Box(TBP)/Promoter/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCTTTKAAAA-
GNCTATAAAAGG

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCTTTKAAAA
NGCAATTAAA-

PH0170.1_Tgif2/Jaspar

Match Rank:6
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----GCTTTKAAAA-
AACTAGCTGTCAATAC

Rhox11/MA0629.1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCTTTKAAAA--
AAGACGCTGTAAAGCGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GCTTTKAAAA--
AAGACGCTGTAAAGCGA

HOXC13/MA0907.1/Jaspar

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCTTTKAAAA-
GCTCGTAAAAA

PH0068.1_Hoxc13/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCTTTKAAAA---
AAAGCTCGTAAAATTT