Information for 6-TTTCCCGGAA (Motif 5)


Reverse Opposite:

p-value:1e-730
log p-value:-1.683e+03
Information Content per bp:1.577
Number of Target Sequences with motif52892.0
Percentage of Target Sequences with motif51.99%
Number of Background Sequences with motif42949.6
Percentage of Background Sequences with motif42.95%
Average Position of motif in Targets100.0 +/- 55.7bp
Average Position of motif in Background100.8 +/- 62.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

STAT1/MA0137.3/Jaspar

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TTTCCCGGAA-
TTTCCTGGAAA

STAT3/MA0144.2/Jaspar

Match Rank:2
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:TTTCCCGGAA-
TTTCCCAGAAN

Stat4/MA0518.1/Jaspar

Match Rank:3
Score:0.88
Offset:-3
Orientation:reverse strand
Alignment:---TTTCCCGGAA-
NNNTTTCCTGGAAA

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:4
Score:0.88
Offset:-1
Orientation:forward strand
Alignment:-TTTCCCGGAA
ATTTCCAAGAA

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.86
Offset:1
Orientation:reverse strand
Alignment:TTTCCCGGAA-
-TTCCNGGAAG

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:6
Score:0.86
Offset:-1
Orientation:forward strand
Alignment:-TTTCCCGGAA-
NTTTCCNGGAAA

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:7
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TTTCCCGGAA--
NATTTCCNGGAAAT

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:8
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--TTTCCCGGAA--
NNCTTCCNGGAAGN

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:9
Score:0.83
Offset:-4
Orientation:forward strand
Alignment:----TTTCCCGGAA-
NNNCTTTCCAGGAAA

STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer

Match Rank:10
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-TTTCCCGGAA-
NTTTCTNAGAAA