Information for 23-CTGACATCAGTC (Motif 23)


Reverse Opposite:

p-value:1e-53
log p-value:-1.221e+02
Information Content per bp:1.960
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif4.2
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets106.9 +/- 55.7bp
Average Position of motif in Background105.7 +/- 60.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TGIF2/MA0797.1/Jaspar

Match Rank:1
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CTGACATCAGTC-
-TGACAGCTGTCA

PKNOX1/MA0782.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTGACATCAGTC-
-TGACACCTGTCA

PKNOX2/MA0783.1/Jaspar

Match Rank:3
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:CTGACATCAGTC-
-TGACACCTGTCA

TGIF1/MA0796.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:CTGACATCAGTC-
-TGACAGCTGTCA

Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer

Match Rank:5
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CTGACATCAGTC
ATGACGTCAYYN

Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CTGACATCAGTC
NGRTGACGTCAY--

JUN/MA0488.1/Jaspar

Match Rank:7
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CTGACATCAGTC-
ATGACATCATCNN

Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-CTGACATCAGTC
GATGACGTCA---

JUND(var.2)/MA0492.1/Jaspar

Match Rank:9
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-CTGACATCAGTC--
NATGACATCATCNNN

c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CTGACATCAGTC
ATGACGTCATCN