Homer de novo Motif Results (/oak/stanford/groups/akundaje/projects/alzheimers_parkinsons/pseudobulk/homer/background_genome_overlap/Cluster1/)

Known Motif Enrichment Results
Gene Ontology Enrichment Results
If Homer is having trouble matching a motif to a known motif, try copy/pasting the matrix file into STAMP
More information on motif finding results: HOMER | Description of Results | Tips
Total target sequences = 103702
Total background sequences = 102254
* - possible false positive
RankMotifP-valuelog P-pvalue% of Targets% of Background STD(Bg STD) Best Match/DetailsMotif File
1 1e-3367-7.754e+035.83%0.69%52.8bp (60.2bp)CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer(0.915)
More Information | Similar Motifs Found		motif file (matrix)
2 1e-1648-3.797e+038.32%2.82%54.0bp (57.3bp)AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer(0.986)
More Information | Similar Motifs Found		motif file (matrix)
3 1e-1352-3.115e+0329.08%18.93%54.8bp (57.5bp)Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer(0.927)
More Information | Similar Motifs Found		motif file (matrix)
4 1e-879-2.025e+0334.58%25.67%55.6bp (61.9bp)NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer(0.935)
More Information | Similar Motifs Found		motif file (matrix)
5 1e-859-1.980e+0360.31%50.59%55.3bp (63.0bp)POL009.1_DCE_S_II/Jaspar(0.769)
More Information | Similar Motifs Found		motif file (matrix)
6 1e-664-1.531e+0326.88%19.77%56.2bp (61.4bp)Bhlha15/MA0607.1/Jaspar(0.845)
More Information | Similar Motifs Found		motif file (matrix)
7 1e-663-1.527e+0365.47%57.07%56.6bp (62.2bp)POL008.1_DCE_S_I/Jaspar(0.693)
More Information | Similar Motifs Found		motif file (matrix)
8 1e-569-1.311e+0346.95%39.12%55.8bp (61.1bp)Stat4/MA0518.1/Jaspar(0.798)
More Information | Similar Motifs Found		motif file (matrix)
9 1e-517-1.191e+0310.83%6.73%55.5bp (56.7bp)Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer(0.920)
More Information | Similar Motifs Found		motif file (matrix)
10 1e-472-1.088e+0352.71%45.49%56.1bp (61.5bp)NFATC3/MA0625.1/Jaspar(0.760)
More Information | Similar Motifs Found		motif file (matrix)
11 1e-428-9.875e+0234.02%27.73%55.6bp (59.6bp)CHR(?)/Hela-CellCycle-Expression/Homer(0.696)
More Information | Similar Motifs Found		motif file (matrix)
12 1e-391-9.008e+0229.45%23.72%55.9bp (61.9bp)TFCP2/MA0145.3/Jaspar(0.714)
More Information | Similar Motifs Found		motif file (matrix)
13 1e-287-6.621e+0223.12%18.61%55.6bp (63.2bp)Gfi1b/MA0483.1/Jaspar(0.734)
More Information | Similar Motifs Found		motif file (matrix)
14 1e-244-5.628e+0219.88%15.96%56.4bp (60.7bp)AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer(0.765)
More Information | Similar Motifs Found		motif file (matrix)
15 1e-229-5.290e+022.60%1.31%54.4bp (56.5bp)HLF/MA0043.2/Jaspar(0.958)
More Information | Similar Motifs Found		motif file (matrix)
16 1e-225-5.190e+0217.22%13.68%56.5bp (59.5bp)NFIA/MA0670.1/Jaspar(0.737)
More Information | Similar Motifs Found		motif file (matrix)
17 1e-107-2.465e+0217.67%15.17%56.1bp (61.4bp)POL013.1_MED-1/Jaspar(0.821)
More Information | Similar Motifs Found		motif file (matrix)
18 1e-84-1.957e+020.13%0.01%50.4bp (30.4bp)PH0036.1_Gsx2/Jaspar(0.630)
More Information | Similar Motifs Found		motif file (matrix)
19 1e-68-1.588e+020.10%0.01%46.8bp (45.6bp)PB0134.1_Hnf4a_2/Jaspar(0.655)
More Information | Similar Motifs Found		motif file (matrix)
20 1e-60-1.396e+020.11%0.01%44.6bp (34.0bp)ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer(0.670)
More Information | Similar Motifs Found		motif file (matrix)
21 1e-59-1.364e+020.07%0.00%47.5bp (20.0bp)NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer(0.604)
More Information | Similar Motifs Found		motif file (matrix)
22 1e-42-9.779e+010.10%0.02%60.0bp (65.1bp)Nr2f6(var.2)/MA0728.1/Jaspar(0.592)
More Information | Similar Motifs Found		motif file (matrix)
23 1e-33-7.663e+010.04%0.00%54.9bp (29.3bp)PH0016.1_Cux1_1/Jaspar(0.609)
More Information | Similar Motifs Found		motif file (matrix)
24 1e-20-4.809e+010.05%0.01%49.0bp (51.8bp)PB0098.1_Zfp410_1/Jaspar(0.709)
More Information | Similar Motifs Found		motif file (matrix)
25 1e-12-2.891e+010.02%0.00%54.0bp (27.9bp)IRF8/MA0652.1/Jaspar(0.649)
More Information | Similar Motifs Found		motif file (matrix)
26 1e-12-2.873e+010.03%0.00%51.6bp (16.3bp)PB0055.1_Rfx4_1/Jaspar(0.795)
More Information | Similar Motifs Found		motif file (matrix)