Information for 8-TGCCAGGRAA (Motif 8)


Reverse Opposite:

p-value:1e-569
log p-value:-1.311e+03
Information Content per bp:1.563
Number of Target Sequences with motif48671.0
Percentage of Target Sequences with motif46.95%
Number of Background Sequences with motif39957.2
Percentage of Background Sequences with motif39.12%
Average Position of motif in Targets100.0 +/- 55.8bp
Average Position of motif in Background100.2 +/- 61.1bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.22
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Stat4/MA0518.1/Jaspar

Match Rank:1
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGRAA---
TTTCCAGGAAATGG

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:2
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-TGCCAGGRAA----
TTTCCTGGAAAGNNN

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:3
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--TGCCAGGRAA
NTTTCCNGGAAA

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:4
Score:0.77
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAGGRAA--
NCTTCCNGGAAGNN

STAT3/MA0144.2/Jaspar

Match Rank:5
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGRAA
CTTCTGGGAAA

STAT1/MA0137.3/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGRAA
TTTCCAGGAAA

STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer

Match Rank:7
Score:0.75
Offset:-2
Orientation:reverse strand
Alignment:--TGCCAGGRAA--
ATTTCCNGGAAATN

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TGCCAGGRAA
CTTCCNGGAA-

Stat5a::Stat5b/MA0519.1/Jaspar

Match Rank:9
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:TGCCAGGRAA-
TTCTTGGAAAN

Stat6/MA0520.1/Jaspar

Match Rank:10
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---TGCCAGGRAA--
CATTTCCTGAGAAAT