Information for 16-GTCTGCTAAGTA (Motif 18)


Reverse Opposite:

p-value:1e-84
log p-value:-1.957e+02
Information Content per bp:1.963
Number of Target Sequences with motif131.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets105.1 +/- 50.4bp
Average Position of motif in Background109.0 +/- 30.4bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0036.1_Gsx2/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA----
NTNNGCTAATTANCNT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----GTCTGCTAAGTA
VBSYGTCTGG------

PH0081.1_Pdx1/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA----
NTGNGCTAATTACCNN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCTGCTAAGTA
CTGTCTGG------

PH0031.1_Evx1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA-----
NNNCACTAATTAGTNNT

PH0131.1_Pax4/Jaspar

Match Rank:6
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA-----
NNGNGCTAATTAGNTNA

PH0097.1_Lhx6_2/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCTGCTAAGTA------
-TCCACTAATTAGCGGTT

Hoxb5/MA0904.1/Jaspar

Match Rank:8
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA----
ATGNGCTAATTANCNT

PH0060.1_Hoxb5/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:GTCTGCTAAGTA----
ATGNGCTAATTANCNT

PH0032.1_Evx2/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTCTGCTAAGTA-----
CACCGCTAATTAGCGGT